Non-Coding RNA Search

Pig4-TMW8007G06

Sequence:


               
               CCTTTCTCCTGGTGTTTAAGCAAAGAATTTTATAATCTGAAAAATAAGTGTGACCTGTTT
CTTCTCTCTGATATTCGTTGTCTCTCTTTGCTTGACTTCTGGGTTTTAAAAAATCCTTTA
GACATTTTACTATTGAATTAATACTGGAGAACGAATAACCTTTGAGGACGTCAGGCTTTT
CTAGGACCAGAATGACTTTTTGGCCACTTTGGATCAGTTGAGCCAGAAGCCAGAACGTCA
TTCGGGTTCAGTGGGAGCAGAGGGAACGTAAGGCTGTCTGATCTCATCTAAGCGAGGAGA
GCAGGCATTTCTGCACTCAGGGAGGCTGCATAGTTTCGAGTAGGGGAGTGTGTGGACTCA
CCACAGTTCCCATCAGCTATTTGGCTGTTTAGACTTGTATTTAAAATTCTGTCTCCTGTT
TTTAAATTTTTCCTTAATTATATCTTTTGCATGCTCGTTACCTTAATCTTGGGTTAGATC
ATTTTTTTCTGCCCACTTAATTTTCCAGCCTCCCACGAAGCTGACAAAACATAAAGAACA
TGTTTCAGTTCTTGGAATCACTTTGTTATATATCCAGCAACAGTTCTAAGAACTTTTGGG
GGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTCTCCTGGTGTTTAAGCAAAGAATTTTATAATCTGAAAAATAAGTGTGACCTGTTT
CTTCTCTCTGATATTCGTTGTCTCTCTTTGCTTGACTTCTGGGTTTTAAAAAATCCTTTA
GACATTTTACTATTGAATTAATACTGGAGAACGAATAACCTTTGAGGACGTCAGGCTTTT
CTAGGACCAGAATGACTTTTTGGCCACTTTGGATCAGTTGAGCCAGAAGCCAGAACGTCA
TTCGGGTTCAGTGGGAGCAGAGGGAACGTAAGGCTGTCTGATCTCATCTAAGCGAGGAGA
GCAGGCATTTCTGCACTCAGGGAGGCTGCATAGTTTCGAGTAGGGGAGTGTGTGGACTCA
CCACAGTTCCCATCAGCTATTTGGCTGTTTAGACTTGTATTTAAAATTCTGTCTCCTGTT
TTTAAATTTTTCCTTAATTATATCTTTTGCATGCTCGTTACCTTAATCTTGGGTTAGATC
ATTTTTTTCTGCCCACTTAATTTTCCAGCCTCCCACGAAGCTGACAAAACATAAAGAACA
TGTTTCAGTTCTTGGAATCACTTTGTTATATATCCAGCAACAGTTCTAAGAACTTTTGGG
GGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-296, + strand, RNAz p=0.512717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-296, + strand, RNAz p=0.512717

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               197-280, + strand, RNAmicro p=0.999523

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               197-280, + strand, RNAmicro p=0.999523

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-581, gnl|bosTau2|chr11 (3650422-3650996)
               

               
               1-581, gnl|canFam2|chr10 (48452688-48452210)
               

               
               1-581, gnl|dasNov1|scaffold_45600 (10484-10048)
               

               
               1-581, gnl|echTel1|scaffold_320008 (123731-124192)
               

               
               1-581, gnl|hg17|chr2 (96713259-96713748)
               

               
               1-581, gnl|Hg17|chr2 (96713944-96713331)
               

               
               1-581, gnl|loxAfr1|scaffold_38905 (6141-6620)
               

               
               1-581, gnl|mm7|chr1 (36602564-36602980)
               

               
               1-581, gnl|monDom2|scaffold_1 (154204556-154205114)
               

               
               1-581, gnl|panTro1|chr12 (99727738-99728228)
               

               
               1-581, gnl|rn3|chr9 (35296109-35296532)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr11 (3650422-3650996)
               

               
               1-581, gnl|canFam2|chr10 (48452688-48452210)
               

               
               1-581, gnl|dasNov1|scaffold_45600 (10484-10048)
               

               
               1-581, gnl|echTel1|scaffold_320008 (123731-124192)
               

               
               1-581, gnl|hg17|chr2 (96713259-96713748)
               

               
               1-581, gnl|Hg17|chr2 (96713944-96713331)
               

               
               1-581, gnl|loxAfr1|scaffold_38905 (6141-6620)
               

               
               1-581, gnl|mm7|chr1 (36602564-36602980)
               

               
               1-581, gnl|monDom2|scaffold_1 (154204556-154205114)
               

               
               1-581, gnl|panTro1|chr12 (99727738-99728228)
               

               
               1-581, gnl|rn3|chr9 (35296109-35296532)

	1-581, gnl\|bosTau2\|chr11 (3650422-3650996)
	1-581, gnl\|canFam2\|chr10 (48452688-48452210)
	1-581, gnl\|dasNov1\|scaffold_45600 (10484-10048)
	1-581, gnl\|echTel1\|scaffold_320008 (123731-124192)
	1-581, gnl\|hg17\|chr2 (96713259-96713748)
	1-581, gnl\|Hg17\|chr2 (96713944-96713331)
	1-581, gnl\|loxAfr1\|scaffold_38905 (6141-6620)
	1-581, gnl\|mm7\|chr1 (36602564-36602980)
	1-581, gnl\|monDom2\|scaffold_1 (154204556-154205114)
	1-581, gnl\|panTro1\|chr12 (99727738-99728228)
	1-581, gnl\|rn3\|chr9 (35296109-35296532)