Non-Coding RNA Search

Pig4-TMW8008G08

Sequence:


               
               GCGGCTCGAGGGCACTTATTTTTGGATTTCCAACAAAATTAGATCCAGGCTTCCAGACAA
AATAACTGCTTCTCCTTTACATTCCTGTGATTCAGCCACCACCTGATTTGAAAATGTTTC
TTGGGCTCTAATATCAACCATGTGTACCTGAGGCTCTGTCTTTCTAGTGGGTTGAAAGGT
GGCTGGGTTTATGATTGCTAGTTACCTTATCCCTGCCCTGGGTGTCCCAGCTTAGACTGG
AAAGGCCGCCCCCAGCTGGCACTGACCTCTAAATGACCCCTAACTTTACAGGCTTAAACT
GCAGGAGTTGCCTAAGAGCAGAAGTCTTTCTGGCCAGCACTTATTACTGCTGTGTTGGTG
ATAAAACTTCAGACAGCCTAATTGATGGCTTTGCTGACCTAACAATACCTTGTGAAAGCA
GAGTGCCAGAGCCTGGTCTCCATTTATGACCAGCTGCAAAGGGAATCTGGGTCTCCCTAC
GATGGGGAGTTTAGGGAGAAGGGGAAAAAATCTTGCAGCCTGTGAACTTTAACCAGATTT
CGACATCTTCTAAGAGGCAGAAGCACAATTGTAAATTGATAGAGGTTTTCACGGGAATAC
TTTTTTCCCCTCCCTGAGCCTTTTTGGCAAGTCAGCCTGAAGTTGGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGGGCACTTATTTTTGGATTTCCAACAAAATTAGATCCAGGCTTCCAGACAA
AATAACTGCTTCTCCTTTACATTCCTGTGATTCAGCCACCACCTGATTTGAAAATGTTTC
TTGGGCTCTAATATCAACCATGTGTACCTGAGGCTCTGTCTTTCTAGTGGGTTGAAAGGT
GGCTGGGTTTATGATTGCTAGTTACCTTATCCCTGCCCTGGGTGTCCCAGCTTAGACTGG
AAAGGCCGCCCCCAGCTGGCACTGACCTCTAAATGACCCCTAACTTTACAGGCTTAAACT
GCAGGAGTTGCCTAAGAGCAGAAGTCTTTCTGGCCAGCACTTATTACTGCTGTGTTGGTG
ATAAAACTTCAGACAGCCTAATTGATGGCTTTGCTGACCTAACAATACCTTGTGAAAGCA
GAGTGCCAGAGCCTGGTCTCCATTTATGACCAGCTGCAAAGGGAATCTGGGTCTCCCTAC
GATGGGGAGTTTAGGGAGAAGGGGAAAAAATCTTGCAGCCTGTGAACTTTAACCAGATTT
CGACATCTTCTAAGAGGCAGAAGCACAATTGTAAATTGATAGAGGTTTTCACGGGAATAC
TTTTTTCCCCTCCCTGAGCCTTTTTGGCAAGTCAGCCTGAAGTTGGCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-326, - strand, RNAz p=0.5119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-326, - strand, RNAz p=0.5119

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-651, gnl|bosTau2|chr10 (18553196-18552558)
               

               
               11-651, gnl|Hg17|chr15 (34977003-34976364)
               

               
               11-651, gnl|Mm7|chr2 (115610452-115609825)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-651, gnl|bosTau2|chr10 (18553196-18552558)
               

               
               11-651, gnl|Hg17|chr15 (34977003-34976364)
               

               
               11-651, gnl|Mm7|chr2 (115610452-115609825)

	11-651, gnl\|bosTau2\|chr10 (18553196-18552558)
	11-651, gnl\|Hg17\|chr15 (34977003-34976364)
	11-651, gnl\|Mm7\|chr2 (115610452-115609825)