Non-Coding RNA Search

Pig4-TMW8009C09

Sequence:


               
               CACTTTGCCCCTGGACAGTGGGGCAGGTTCGGAAGGCAGCGGCACTGCCACCCCTTCAGC
CCTTATTACTACCAACATGGTAGCCATGGAGGCCATCTGTCCAGAGGGTATTGCCCGTCT
TGCCAACAGTGGCATCAACGTCATGCAGGTGGCGGATCTGCAGTCCATTAATATCAGTGG
CAATGGCTTCTGAGATCAGGCACCCAGGGCTAGAGACATATGGGCCATACCCATCAACCC
TGGGATGCAAGGTAGCTTGGGTCCAAGAGACATGTGGGAGAGCGAGCCATGAGGCATTAA
AAATGCATGGTGGTGGGAAGAATTGGGGGAGGGCTACAAGAGAAGAGATGGGGTCCTGGC
ACCCACCTATATCATCAATACCTCCTTGAAGTGGGAAACATTAGTGAAAATTCTGTTGGT
GCCACCCTTTGATGAGCATTTGTTTGACCCCAGACAGTTTCTTAACACTTCTTACCCCAG
CCTCCCCGTCCTGCATTTCCCTTCTCAGCTCCCCCATGATGGATCCCCCCTTTCCTAAAG
CCATCATGCCTTGATAAATATATATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTGCCCCTGGACAGTGGGGCAGGTTCGGAAGGCAGCGGCACTGCCACCCCTTCAGC
CCTTATTACTACCAACATGGTAGCCATGGAGGCCATCTGTCCAGAGGGTATTGCCCGTCT
TGCCAACAGTGGCATCAACGTCATGCAGGTGGCGGATCTGCAGTCCATTAATATCAGTGG
CAATGGCTTCTGAGATCAGGCACCCAGGGCTAGAGACATATGGGCCATACCCATCAACCC
TGGGATGCAAGGTAGCTTGGGTCCAAGAGACATGTGGGAGAGCGAGCCATGAGGCATTAA
AAATGCATGGTGGTGGGAAGAATTGGGGGAGGGCTACAAGAGAAGAGATGGGGTCCTGGC
ACCCACCTATATCATCAATACCTCCTTGAAGTGGGAAACATTAGTGAAAATTCTGTTGGT
GCCACCCTTTGATGAGCATTTGTTTGACCCCAGACAGTTTCTTAACACTTCTTACCCCAG
CCTCCCCGTCCTGCATTTCCCTTCTCAGCTCCCCCATGATGGATCCCCCCTTTCCTAAAG
CCATCATGCCTTGATAAATATATATGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32165616|gb|AAP72036.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32165616|gb|AAP72036.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-318, + strand, RNAz p=0.992794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-318, + strand, RNAz p=0.992794

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_138473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138473, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-568, gnl|bosTau2|chr5 (19040045-19039466)
               

               
               1-568, gnl|Hg17|chr12 (52091099-52091665)
               

               
               1-568, gnl|Mm7|chr15 (102417003-102417564)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-568, gnl|bosTau2|chr5 (19040045-19039466)
               

               
               1-568, gnl|Hg17|chr12 (52091099-52091665)
               

               
               1-568, gnl|Mm7|chr15 (102417003-102417564)

	1-568, gnl\|bosTau2\|chr5 (19040045-19039466)
	1-568, gnl\|Hg17\|chr12 (52091099-52091665)
	1-568, gnl\|Mm7\|chr15 (102417003-102417564)