Non-Coding RNA Search

Pig4-TMW8009D01

Sequence:


               
               GGGTTTCCTACCTTTGTTCGAAGCCTTGCTGGAATGTGATTGAATCTCGGCGGCAGCTGA
CGTACAGACACTGCTAGAGATGGACGTTTCTCCGTAATCAGGAGTTGCTGGGTGTGCCTG
GAGAAGCTCCAAAAAGGTTAATAAGTGCCTGTGGAAGCAAGAGAGGGAAGATTGAAAGAG
ACCTCAGGAAATTCTCACAATGGTGCACGGAAAAGGAGGCAAGTGCCAAGTCTCTAGTCT
GCCTTTAGATCAATGAAGAGAAACATAAACAGAAGGAGCAGAGTGGGTGACACCCACTGC
TGTCACATGACTGGCTATGTGATCCGCACTTCCTCTCCCACACATGCCAACTGCCTCTGA
GCCTGGGAATGGGAGAAATGGACACAGAACCCTCCTCACCTGGTCCTCGGGGATTGGGAA
AAAAATGGGCTGGTATGACTTGAGTTCAGCTGTTCAGAGCCCCTGAGAACAGAGTCCCTC
AACTCACCATTTTGCTTTGGAAGGCTTATTATTTTACATTTCTCAAAATAACATGGTAAA
ATTACAGGCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTCCTACCTTTGTTCGAAGCCTTGCTGGAATGTGATTGAATCTCGGCGGCAGCTGA
CGTACAGACACTGCTAGAGATGGACGTTTCTCCGTAATCAGGAGTTGCTGGGTGTGCCTG
GAGAAGCTCCAAAAAGGTTAATAAGTGCCTGTGGAAGCAAGAGAGGGAAGATTGAAAGAG
ACCTCAGGAAATTCTCACAATGGTGCACGGAAAAGGAGGCAAGTGCCAAGTCTCTAGTCT
GCCTTTAGATCAATGAAGAGAAACATAAACAGAAGGAGCAGAGTGGGTGACACCCACTGC
TGTCACATGACTGGCTATGTGATCCGCACTTCCTCTCCCACACATGCCAACTGCCTCTGA
GCCTGGGAATGGGAGAAATGGACACAGAACCCTCCTCACCTGGTCCTCGGGGATTGGGAA
AAAAATGGGCTGGTATGACTTGAGTTCAGCTGTTCAGAGCCCCTGAGAACAGAGTCCCTC
AACTCACCATTTTGCTTTGGAAGGCTTATTATTTTACATTTCTCAAAATAACATGGTAAA
ATTACAGGCAACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               100-219, - strand, RNAz p=0.951441

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-219, - strand, RNAz p=0.951441

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               100-553, gnl|bosTau2|chrX (37245794-37245349)
               

               
               100-553, gnl|canFam2|chrX (20537593-20537975)
               

               
               100-553, gnl|dasNov1|scaffold_80529 (4605-4224)
               

               
               100-553, gnl|hg17|chrX (24830515-24830889)
               

               
               100-553, gnl|Hg17|chrX (24830532-24830972)
               

               
               100-553, gnl|loxAfr1|scaffold_4244 (52452-52071)
               

               
               100-553, gnl|mm7|chrX (88636229-88635871)
               

               
               100-553, gnl|Mm7|chrX (88636211-88635794)
               

               
               100-553, gnl|oryCun1|scaffold_188157 (54964-55315)
               

               
               100-553, gnl|panTro1|chrX (25651489-25651863)
               

               
               100-553, gnl|rheMac2|chrX (22889881-22890255)
               

               
               100-553, gnl|rn3|chrX (80656514-80656175)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-553, gnl|bosTau2|chrX (37245794-37245349)
               

               
               100-553, gnl|canFam2|chrX (20537593-20537975)
               

               
               100-553, gnl|dasNov1|scaffold_80529 (4605-4224)
               

               
               100-553, gnl|hg17|chrX (24830515-24830889)
               

               
               100-553, gnl|Hg17|chrX (24830532-24830972)
               

               
               100-553, gnl|loxAfr1|scaffold_4244 (52452-52071)
               

               
               100-553, gnl|mm7|chrX (88636229-88635871)
               

               
               100-553, gnl|Mm7|chrX (88636211-88635794)
               

               
               100-553, gnl|oryCun1|scaffold_188157 (54964-55315)
               

               
               100-553, gnl|panTro1|chrX (25651489-25651863)
               

               
               100-553, gnl|rheMac2|chrX (22889881-22890255)
               

               
               100-553, gnl|rn3|chrX (80656514-80656175)

	100-553, gnl\|bosTau2\|chrX (37245794-37245349)
	100-553, gnl\|canFam2\|chrX (20537593-20537975)
	100-553, gnl\|dasNov1\|scaffold_80529 (4605-4224)
	100-553, gnl\|hg17\|chrX (24830515-24830889)
	100-553, gnl\|Hg17\|chrX (24830532-24830972)
	100-553, gnl\|loxAfr1\|scaffold_4244 (52452-52071)
	100-553, gnl\|mm7\|chrX (88636229-88635871)
	100-553, gnl\|Mm7\|chrX (88636211-88635794)
	100-553, gnl\|oryCun1\|scaffold_188157 (54964-55315)
	100-553, gnl\|panTro1\|chrX (25651489-25651863)
	100-553, gnl\|rheMac2\|chrX (22889881-22890255)
	100-553, gnl\|rn3\|chrX (80656514-80656175)