Non-Coding RNA Search

Pig4-TMW8009J09

Sequence:


               
               GTATTTTTGTCGTCTGGCCGGGTGGACTCAGAGGGACCTCATGGGGGCTCCAGCTGACAC
TCAGGCCTGGGCCAGAGGGCTCAGCCGACCCCTGATGCCCAAACTGCCGGCCCAGGATCT
GTGCCAGCACAGTGACAAGCTGTGGGCAGGGGGCGGCTCATGGGAAATGCACAGCCAGGA
TGGACCGTGGAAGTTTCCATGGTCACGGGATGGAAACCATTTCCTATCGATGTGGAAATA
ACAGGTGGCCCCCTCAGGCCTCCCGTTTCATTTCTTTCCAGGAAGCAGTTCAAACGGGAT
TTGGACACCCGTTTGAGACAGACAAGGTTTGGTCCTGACCCCCTGCAATCACTTCATTAA
CCAGAGACTCCCACCCTCCTCCTGGGAGTGGCGTGGGAGCCTGGTTGGTAGGGGGCTCCT
CCACCCCTGCCATGTGTCCTGCAACGGTGGCCGTGCCCGGCCTCAGCAGCCACTCTGGAC
CTGGGGTCCGAGGACGGCATCTGCCCTGGGGAGCGGCTTCCTTAACGCATCTGTGGTTTT
CTCTTGTTCCTGTCGCCACTTTTCAAAAACCTGGGGAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATTTTTGTCGTCTGGCCGGGTGGACTCAGAGGGACCTCATGGGGGCTCCAGCTGACAC
TCAGGCCTGGGCCAGAGGGCTCAGCCGACCCCTGATGCCCAAACTGCCGGCCCAGGATCT
GTGCCAGCACAGTGACAAGCTGTGGGCAGGGGGCGGCTCATGGGAAATGCACAGCCAGGA
TGGACCGTGGAAGTTTCCATGGTCACGGGATGGAAACCATTTCCTATCGATGTGGAAATA
ACAGGTGGCCCCCTCAGGCCTCCCGTTTCATTTCTTTCCAGGAAGCAGTTCAAACGGGAT
TTGGACACCCGTTTGAGACAGACAAGGTTTGGTCCTGACCCCCTGCAATCACTTCATTAA
CCAGAGACTCCCACCCTCCTCCTGGGAGTGGCGTGGGAGCCTGGTTGGTAGGGGGCTCCT
CCACCCCTGCCATGTGTCCTGCAACGGTGGCCGTGCCCGGCCTCAGCAGCCACTCTGGAC
CTGGGGTCCGAGGACGGCATCTGCCCTGGGGAGCGGCTTCCTTAACGCATCTGTGGTTTT
CTCTTGTTCCTGTCGCCACTTTTCAAAAACCTGGGGAAAGCCT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               95-243, - strand, RNAz p=0.974981
               

               
               126-241, - strand, RNAz p=0.831054
               

               
               283-413, - strand, RNAz p=0.649747
               

               
               297-413, - strand, RNAz p=0.577255

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-243, - strand, RNAz p=0.974981
               

               
               126-241, - strand, RNAz p=0.831054
               

               
               283-413, - strand, RNAz p=0.649747
               

               
               297-413, - strand, RNAz p=0.577255

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               15-413, gnl|bosTau2|chr29 (43702473-43702873)
               

               
               15-413, gnl|canFam2|chr18 (49867180-49867793)
               

               
               15-413, gnl|hg17|chr11 (2841900-2842659)
               

               
               15-413, gnl|Hg17|chr11 (2842288-2842658)
               

               
               15-413, gnl|loxAfr1|scaffold_86356 (5977-6612)
               

               
               15-413, gnl|mm7|chr7 (139866489-139867004)
               

               
               15-413, gnl|panTro1|chr9 (3026877-3027635)
               

               
               15-413, gnl|rheMac2|chr14 (2872992-2873756)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-413, gnl|bosTau2|chr29 (43702473-43702873)
               

               
               15-413, gnl|canFam2|chr18 (49867180-49867793)
               

               
               15-413, gnl|hg17|chr11 (2841900-2842659)
               

               
               15-413, gnl|Hg17|chr11 (2842288-2842658)
               

               
               15-413, gnl|loxAfr1|scaffold_86356 (5977-6612)
               

               
               15-413, gnl|mm7|chr7 (139866489-139867004)
               

               
               15-413, gnl|panTro1|chr9 (3026877-3027635)
               

               
               15-413, gnl|rheMac2|chr14 (2872992-2873756)

	95-243, - strand, RNAz p=0.974981
	126-241, - strand, RNAz p=0.831054
	283-413, - strand, RNAz p=0.649747
	297-413, - strand, RNAz p=0.577255

	15-413, gnl\|bosTau2\|chr29 (43702473-43702873)
	15-413, gnl\|canFam2\|chr18 (49867180-49867793)
	15-413, gnl\|hg17\|chr11 (2841900-2842659)
	15-413, gnl\|Hg17\|chr11 (2842288-2842658)
	15-413, gnl\|loxAfr1\|scaffold_86356 (5977-6612)
	15-413, gnl\|mm7\|chr7 (139866489-139867004)
	15-413, gnl\|panTro1\|chr9 (3026877-3027635)
	15-413, gnl\|rheMac2\|chr14 (2872992-2873756)