Non-Coding RNA Search

Pig4-TMW8010L03

Sequence:


               
               GTAGAACATGTAAATGTTCACCTTTCTGAGACTGAACCATAATTACAATAGAAGTTTAGA
AAGGGTAAAGAATAGCGTAGGCTTTAGTTAGGAAAATAAAACTGAAAAATGGCAATCACT
GTGGCTCACATTTTCTTTTGACTCACCTGTGTTCTTCAGCTCCAGCTTTTGTAACTACTA
GATTTAGGGAGTGACCATTATCAGTAAGGAGTACCTAATTTCCAAGTAAAAAAGGATTAT
TGATCCCAGATTAAAAATTTTAGCTAGCAAGGATCTTACTTGGATACCTAGGAAAATAAC
AGAGGGAGCCACTAGCAACTGAAAAGTGAAGGAAGAATTTAATTTCTCCATCCAGGTACA
AATTAAATGTATAGTATATATAATATGCAGAAGGGGAACTATATGTAGGCCTAAGTGTAT
TTGGGTATCGGCTCTGCTCATTAACAGAATTGGACTAGATCATTAATTTTCAATCTGTTC
AAATAAAGGGGCTTGTAATTAAAAAATTTGGCAGTGGTGGGAGCTCATGGAATTAAGTAT
TAATATCATTAATTCCATAGATGGAGAAAATATAAATGAGGAATTGAAGACCCTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGAACATGTAAATGTTCACCTTTCTGAGACTGAACCATAATTACAATAGAAGTTTAGA
AAGGGTAAAGAATAGCGTAGGCTTTAGTTAGGAAAATAAAACTGAAAAATGGCAATCACT
GTGGCTCACATTTTCTTTTGACTCACCTGTGTTCTTCAGCTCCAGCTTTTGTAACTACTA
GATTTAGGGAGTGACCATTATCAGTAAGGAGTACCTAATTTCCAAGTAAAAAAGGATTAT
TGATCCCAGATTAAAAATTTTAGCTAGCAAGGATCTTACTTGGATACCTAGGAAAATAAC
AGAGGGAGCCACTAGCAACTGAAAAGTGAAGGAAGAATTTAATTTCTCCATCCAGGTACA
AATTAAATGTATAGTATATATAATATGCAGAAGGGGAACTATATGTAGGCCTAAGTGTAT
TTGGGTATCGGCTCTGCTCATTAACAGAATTGGACTAGATCATTAATTTTCAATCTGTTC
AAATAAAGGGGCTTGTAATTAAAAAATTTGGCAGTGGTGGGAGCTCATGGAATTAAGTAT
TAATATCATTAATTCCATAGATGGAGAAAATATAAATGAGGAATTGAAGACCCTTTGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-121, + strand, RNAz p=0.52838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, + strand, RNAz p=0.52838

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-599, gnl|bosTau2|chr1 (42335189-42334600)
               

               
               2-599, gnl|canFam2|chr33 (32493421-32493763)
               

               
               2-599, gnl|hg17|chr3 (197566804-197567104)
               

               
               2-599, gnl|Hg17|chr3 (197567375-197566811)
               

               
               2-599, gnl|loxAfr1|scaffold_62364 (1671-1928)
               

               
               2-599, gnl|mm7|chr16 (32063354-32063065)
               

               
               2-599, gnl|Mm7|chr16 (32062835-32063466)
               

               
               2-599, gnl|oryCun1|scaffold_83145 (3556-3855)
               

               
               2-599, gnl|panTro1|chr2 (201738305-201738605)
               

               
               2-599, gnl|rheMac2|chr2 (189088269-189087976)
               

               
               2-599, gnl|rn3|chr11 (70270698-70270938)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-599, gnl|bosTau2|chr1 (42335189-42334600)
               

               
               2-599, gnl|canFam2|chr33 (32493421-32493763)
               

               
               2-599, gnl|hg17|chr3 (197566804-197567104)
               

               
               2-599, gnl|Hg17|chr3 (197567375-197566811)
               

               
               2-599, gnl|loxAfr1|scaffold_62364 (1671-1928)
               

               
               2-599, gnl|mm7|chr16 (32063354-32063065)
               

               
               2-599, gnl|Mm7|chr16 (32062835-32063466)
               

               
               2-599, gnl|oryCun1|scaffold_83145 (3556-3855)
               

               
               2-599, gnl|panTro1|chr2 (201738305-201738605)
               

               
               2-599, gnl|rheMac2|chr2 (189088269-189087976)
               

               
               2-599, gnl|rn3|chr11 (70270698-70270938)

	2-599, gnl\|bosTau2\|chr1 (42335189-42334600)
	2-599, gnl\|canFam2\|chr33 (32493421-32493763)
	2-599, gnl\|hg17\|chr3 (197566804-197567104)
	2-599, gnl\|Hg17\|chr3 (197567375-197566811)
	2-599, gnl\|loxAfr1\|scaffold_62364 (1671-1928)
	2-599, gnl\|mm7\|chr16 (32063354-32063065)
	2-599, gnl\|Mm7\|chr16 (32062835-32063466)
	2-599, gnl\|oryCun1\|scaffold_83145 (3556-3855)
	2-599, gnl\|panTro1\|chr2 (201738305-201738605)
	2-599, gnl\|rheMac2\|chr2 (189088269-189087976)
	2-599, gnl\|rn3\|chr11 (70270698-70270938)