Non-Coding RNA Search

Pig4-TMW8012I15

Sequence:


               
               ACAGTGTTTTTTGCTCCAGCCCCCCCTGACATTCTCTGTGGGGTTGTGGGGTTGAGAGGC
GTGTGAGAGAATTACTTCTCTTGGGTTCCTTGGGCCACCTCCCGGCCCCCAAGGAGGCAG
AGCAACTGTTACCGTGGAATTTGAAATACTAGCTATGTTAATGGAGGTCAGAAGTGGGGA
GACTGGATTTACAGCTCCCCAAATTGACCCGGATTTATTTTCTATTATTCAAAATTAGTT
ATGTTGAAGGAGGAGCAAGGGGCTTCTTGGTGTATAGACGATCACTAATGTGTCTCTGGA
CTTAAATCTTGTTTGGCTTTTATCTGTTCTGGAGGATGTGACTTGGGGTCCTGACCACAG
CAGCAGCAGAATTTGCATGTGGGCAGCTCTGGCCTCCCAGACCTTAGTGACCTGGGCTGG
CCACCCATCTCTGCCTTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTGTTTTTTGCTCCAGCCCCCCCTGACATTCTCTGTGGGGTTGTGGGGTTGAGAGGC
GTGTGAGAGAATTACTTCTCTTGGGTTCCTTGGGCCACCTCCCGGCCCCCAAGGAGGCAG
AGCAACTGTTACCGTGGAATTTGAAATACTAGCTATGTTAATGGAGGTCAGAAGTGGGGA
GACTGGATTTACAGCTCCCCAAATTGACCCGGATTTATTTTCTATTATTCAAAATTAGTT
ATGTTGAAGGAGGAGCAAGGGGCTTCTTGGTGTATAGACGATCACTAATGTGTCTCTGGA
CTTAAATCTTGTTTGGCTTTTATCTGTTCTGGAGGATGTGACTTGGGGTCCTGACCACAG
CAGCAGCAGAATTTGCATGTGGGCAGCTCTGGCCTCCCAGACCTTAGTGACCTGGGCTGG
CCACCCATCTCTGCCTTGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               92-247, - strand, RNAz p=0.936759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-247, - strand, RNAz p=0.936759

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               16-352, gnl|bosTau2|chr15 (4314824-4315160)
               

               
               16-352, gnl|canFam2|chr21 (7960815-7960413)
               

               
               16-352, gnl|hg17|chr11 (95569940-95570349)
               

               
               16-352, gnl|Hg17|chr11 (95570314-95569990)
               

               
               16-352, gnl|loxAfr1|scaffold_359 (193345-192925)
               

               
               16-352, gnl|mm7|chr9 (13365836-13365490)
               

               
               16-352, gnl|Mm7|chr9 (13365499-13365786)
               

               
               16-352, gnl|oryCun1|scaffold_198422 (92732-92329)
               

               
               16-352, gnl|panTro1|chr9 (97488629-97489038)
               

               
               16-352, gnl|rheMac2|chr14 (94752906-94753313)
               

               
               16-352, gnl|rn3|chr8 (10295864-10295481)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-352, gnl|bosTau2|chr15 (4314824-4315160)
               

               
               16-352, gnl|canFam2|chr21 (7960815-7960413)
               

               
               16-352, gnl|hg17|chr11 (95569940-95570349)
               

               
               16-352, gnl|Hg17|chr11 (95570314-95569990)
               

               
               16-352, gnl|loxAfr1|scaffold_359 (193345-192925)
               

               
               16-352, gnl|mm7|chr9 (13365836-13365490)
               

               
               16-352, gnl|Mm7|chr9 (13365499-13365786)
               

               
               16-352, gnl|oryCun1|scaffold_198422 (92732-92329)
               

               
               16-352, gnl|panTro1|chr9 (97488629-97489038)
               

               
               16-352, gnl|rheMac2|chr14 (94752906-94753313)
               

               
               16-352, gnl|rn3|chr8 (10295864-10295481)

	16-352, gnl\|bosTau2\|chr15 (4314824-4315160)
	16-352, gnl\|canFam2\|chr21 (7960815-7960413)
	16-352, gnl\|hg17\|chr11 (95569940-95570349)
	16-352, gnl\|Hg17\|chr11 (95570314-95569990)
	16-352, gnl\|loxAfr1\|scaffold_359 (193345-192925)
	16-352, gnl\|mm7\|chr9 (13365836-13365490)
	16-352, gnl\|Mm7\|chr9 (13365499-13365786)
	16-352, gnl\|oryCun1\|scaffold_198422 (92732-92329)
	16-352, gnl\|panTro1\|chr9 (97488629-97489038)
	16-352, gnl\|rheMac2\|chr14 (94752906-94753313)
	16-352, gnl\|rn3\|chr8 (10295864-10295481)