Non-Coding RNA Search

Pig4-TMW8012I17

Sequence:


               
               AGCACCTCCCCGGGCACCGACCTGCCGCTGAGCGAGATCCCGCACAGCGTGGGCGTCGCC
CTGGACTACGAGGCGGGGCGCGTGGCCCTGCTCAACGCCGAGACCCGGGCGCCCATCTTC
ACTTTCGCCGCCTCCTTCTCCGGCAAAGTGTTTCCTTTCTTCGCCGTCTGGAAAAAAGGC
TCCTGCCTGACTTTGAAAGGCTGAGGCGCAGCGTCGGAAGGGCGGTGTCAGCGGAGAGAG
CAGCACCCGGGATCCAACTCCCACCCTTGGGCGTTTCCTTGTGCCCAAGACCGCAGGGGA
CACGGCTCTCAGAGTCCGCAGTGCTCTGTAATTTTTTCACTTTATTTATCTGATGCCCTT
CAGCCTTGACGTTCCTGGTTCCCCGCTGACGCTCCCGCCTTCTCTGCACCTCCGAGAGGA
GAGCCAGAGGCAGACGAGGCGGCGCCTAGGACACCAGCACGCTGGGGAGCCGGTGGGGTT
GTCCGGGGAAGATTTTTTTTTAAATAAAAATATCTAAAGTGTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACCTCCCCGGGCACCGACCTGCCGCTGAGCGAGATCCCGCACAGCGTGGGCGTCGCC
CTGGACTACGAGGCGGGGCGCGTGGCCCTGCTCAACGCCGAGACCCGGGCGCCCATCTTC
ACTTTCGCCGCCTCCTTCTCCGGCAAAGTGTTTCCTTTCTTCGCCGTCTGGAAAAAAGGC
TCCTGCCTGACTTTGAAAGGCTGAGGCGCAGCGTCGGAAGGGCGGTGTCAGCGGAGAGAG
CAGCACCCGGGATCCAACTCCCACCCTTGGGCGTTTCCTTGTGCCCAAGACCGCAGGGGA
CACGGCTCTCAGAGTCCGCAGTGCTCTGTAATTTTTTCACTTTATTTATCTGATGCCCTT
CAGCCTTGACGTTCCTGGTTCCCCGCTGACGCTCCCGCCTTCTCTGCACCTCCGAGAGGA
GAGCCAGAGGCAGACGAGGCGGCGCCTAGGACACCAGCACGCTGGGGAGCCGGTGGGGTT
GTCCGGGGAAGATTTTTTTTTAAATAAAAATATCTAAAGTGTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               347-463, - strand, RNAz p=0.955047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-463, - strand, RNAz p=0.955047

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               371-483, - strand, RNAmicro p=0.973933

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               371-483, - strand, RNAmicro p=0.973933

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-476, gnl|bosTau2|chr23 (23888661-23888212)
               

               
               1-476, gnl|Hg17|chr6 (30247902-30248389)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-476, gnl|bosTau2|chr23 (23888661-23888212)
               

               
               1-476, gnl|Hg17|chr6 (30247902-30248389)

	1-476, gnl\|bosTau2\|chr23 (23888661-23888212)
	1-476, gnl\|Hg17\|chr6 (30247902-30248389)