Non-Coding RNA Search

Pig4-TMW8013N13

Sequence:


               
               GCCTCATCCAGCCTGGGAGAAGCGGCAAGAGCGAAAAGTCCTTCAGAGAACGCTGCCCCC
GGCTGCTTTTCAGCCACCTTCCGGAGCACAGAGTCCTGGCCTTAGTGGATCTTGCGTGCA
TACCTGTCTCTTGGGGACGGGCTGAGAGGAGGCCTTCTCAGGCCTCTCAGGGTCCCAGGA
AGGGTGTGTTGAATCCATGTGTCTGCAATCAGGGGAGACAGACTGGAAATGGCCTGAAGC
TCTGCCCTCTGAGGCAGGCACGTTTTAAGGCCCGCCTGACACAGCCTCTTGAACTCCACC
CTTAAATGGGGCTCTGTCTCCTGCGAGCCAGTTGCATTTAGGTTCTTGCATGGTCCATAG
TCACCTGGCCCCCGAGTGTGGAAGCTGGTTTTTGCCTTTTTTCTTTTTCTTTGCCCACGT
AGGCGCAAGTACCTTTTATTCCCGGGAAACCGAGCTTTCTCAGTCCCCATTGTGGAAATA
TTGCCGGAATGTAATAAATCTGACTGTGTTTATGTTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCATCCAGCCTGGGAGAAGCGGCAAGAGCGAAAAGTCCTTCAGAGAACGCTGCCCCC
GGCTGCTTTTCAGCCACCTTCCGGAGCACAGAGTCCTGGCCTTAGTGGATCTTGCGTGCA
TACCTGTCTCTTGGGGACGGGCTGAGAGGAGGCCTTCTCAGGCCTCTCAGGGTCCCAGGA
AGGGTGTGTTGAATCCATGTGTCTGCAATCAGGGGAGACAGACTGGAAATGGCCTGAAGC
TCTGCCCTCTGAGGCAGGCACGTTTTAAGGCCCGCCTGACACAGCCTCTTGAACTCCACC
CTTAAATGGGGCTCTGTCTCCTGCGAGCCAGTTGCATTTAGGTTCTTGCATGGTCCATAG
TCACCTGGCCCCCGAGTGTGGAAGCTGGTTTTTGCCTTTTTTCTTTTTCTTTGCCCACGT
AGGCGCAAGTACCTTTTATTCCCGGGAAACCGAGCTTTCTCAGTCCCCATTGTGGAAATA
TTGCCGGAATGTAATAAATCTGACTGTGTTTATGTTGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-232, + strand, RNAz p=0.917342

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-232, + strand, RNAz p=0.917342

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-523, gnl|bosTau2|chr3 (60774907-60775470)
               

               
               1-523, gnl|canFam2|chr5 (57731707-57730912)
               

               
               1-523, gnl|dasNov1|scaffold_1924 (32876-33602)
               

               
               1-523, gnl|echTel1|scaffold_306420 (37100-37807)
               

               
               1-523, gnl|hg17|chr1 (54512974-54513775)
               

               
               1-523, gnl|Hg17|chr1 (54513533-54512986)
               

               
               1-523, gnl|loxAfr1|scaffold_17401 (73854-74637)
               

               
               1-523, gnl|mm7|chr4 (106348008-106347312)
               

               
               1-523, gnl|oryCun1|scaffold_202325 (73720-72998)
               

               
               1-523, gnl|panTro1|chr1 (52793260-52794061)
               

               
               1-523, gnl|rheMac2|chr1 (57213416-57214217)
               

               
               1-523, gnl|rn3|chr5 (128053209-128052480)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr3 (60774907-60775470)
               

               
               1-523, gnl|canFam2|chr5 (57731707-57730912)
               

               
               1-523, gnl|dasNov1|scaffold_1924 (32876-33602)
               

               
               1-523, gnl|echTel1|scaffold_306420 (37100-37807)
               

               
               1-523, gnl|hg17|chr1 (54512974-54513775)
               

               
               1-523, gnl|Hg17|chr1 (54513533-54512986)
               

               
               1-523, gnl|loxAfr1|scaffold_17401 (73854-74637)
               

               
               1-523, gnl|mm7|chr4 (106348008-106347312)
               

               
               1-523, gnl|oryCun1|scaffold_202325 (73720-72998)
               

               
               1-523, gnl|panTro1|chr1 (52793260-52794061)
               

               
               1-523, gnl|rheMac2|chr1 (57213416-57214217)
               

               
               1-523, gnl|rn3|chr5 (128053209-128052480)

	1-523, gnl\|bosTau2\|chr3 (60774907-60775470)
	1-523, gnl\|canFam2\|chr5 (57731707-57730912)
	1-523, gnl\|dasNov1\|scaffold_1924 (32876-33602)
	1-523, gnl\|echTel1\|scaffold_306420 (37100-37807)
	1-523, gnl\|hg17\|chr1 (54512974-54513775)
	1-523, gnl\|Hg17\|chr1 (54513533-54512986)
	1-523, gnl\|loxAfr1\|scaffold_17401 (73854-74637)
	1-523, gnl\|mm7\|chr4 (106348008-106347312)
	1-523, gnl\|oryCun1\|scaffold_202325 (73720-72998)
	1-523, gnl\|panTro1\|chr1 (52793260-52794061)
	1-523, gnl\|rheMac2\|chr1 (57213416-57214217)
	1-523, gnl\|rn3\|chr5 (128053209-128052480)