Non-Coding RNA Search

Pig4-TMW8015B04

Sequence:


               
               GAGAGAAGAAGCTCGGACCTCCCCCCGGCCAGCCTCACCCGCCCGCTCTGGCTCCCCAGC
CCCAGAGACCACCAATGAGAGCGTGCCCTTCGCTCAGCACAGCAGCCTGGATTCTCGCAT
TGAGATGTTGCTGAAGGAGCAGCGCTCCAAGTTTTCTTTCCTGGCCTCCGACACTGAGGA
AGAGGAAGAAAACAGCGCCACAGGCCCTGGTGCCAGAGATGCGGGGAGCGAGCTGCCTTC
TGGGTCAGGTCACGGCCCCTGCACGCCCCCTCCAGCCCCAGCAAATTTTGAGGATGTGGC
ACCCACAGGGAGTGGGGACCCAGGAGCTCCCCGGGAGTCACCCAAGGCCAACGGACAGAG
CCAGGCTTCTCCATGCTCTTCTGGAGAGGACATGGAAATCTCCGACGATGACCGGGGCGG
CTCACCCCCTCCGGCCCCCACACCCCCCCAGCAACCCCCACCCCCTCCCCCTCCTCCAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAAGAAGCTCGGACCTCCCCCCGGCCAGCCTCACCCGCCCGCTCTGGCTCCCCAGC
CCCAGAGACCACCAATGAGAGCGTGCCCTTCGCTCAGCACAGCAGCCTGGATTCTCGCAT
TGAGATGTTGCTGAAGGAGCAGCGCTCCAAGTTTTCTTTCCTGGCCTCCGACACTGAGGA
AGAGGAAGAAAACAGCGCCACAGGCCCTGGTGCCAGAGATGCGGGGAGCGAGCTGCCTTC
TGGGTCAGGTCACGGCCCCTGCACGCCCCCTCCAGCCCCAGCAAATTTTGAGGATGTGGC
ACCCACAGGGAGTGGGGACCCAGGAGCTCCCCGGGAGTCACCCAAGGCCAACGGACAGAG
CCAGGCTTCTCCATGCTCTTCTGGAGAGGACATGGAAATCTCCGACGATGACCGGGGCGG
CTCACCCCCTCCGGCCCCCACACCCCCCCAGCAACCCCCACCCCCTCCCCCTCCTCCAAA
AA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, + strand, RNAz p=0.961718

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.961718

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-365, gnl|bosTau2|chr25 (22866199-22866563)
               

               
               1-365, gnl|Hg17|chr16 (30883920-30884284)
               

               
               1-365, gnl|Mm7|chr7 (123881931-123882295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-365, gnl|bosTau2|chr25 (22866199-22866563)
               

               
               1-365, gnl|Hg17|chr16 (30883920-30884284)
               

               
               1-365, gnl|Mm7|chr7 (123881931-123882295)

	1-365, gnl\|bosTau2\|chr25 (22866199-22866563)
	1-365, gnl\|Hg17\|chr16 (30883920-30884284)
	1-365, gnl\|Mm7\|chr7 (123881931-123882295)