Pig4-TMW8016J17
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCATGGGAAACACGGGGTGGACGTGGAAGTCCAGGGGCCCCATGAAGCCCGGGATGGG CAGCTCCTTATCCGCCTGGATTTGAACCGCAAGGAGGTGCTGACCTTGAGGCTTCGGAAT GGAGGAACCCAGCCTGTCACCCTCACCCACCTCTTCCCACTCTGCCGGACTCCCCAGTTT GCCTTCTACAATGGAGACCAGGAGCTGCCCTGCCCCCTGGGCCCTGGTGAATCCTATGAG CTCCACGTCCACTGTAAGACCAGCTTCGTGGGCTACTTCCCAGCCACGGTGCTCTGGGAG CTGCTGGGACCTGGGGAGCCAGGTTCAGAAGGAGCTGGCACTTTCTACATTGCCCGCTTC TTGGCTGGCGTCGCCCACAGCCCCCTGGCAGCACAGCTGAAGCCCACGACTCCCTTCAAG CGGACCCAGATCACTGGAAACCCTGTGGTGACCAACCGGGTAGAGGAAGGAGAGCGACCG GACCGGTAACTCCTCCTTCCAACCCAGGCCAGGCTCAGGGGTGAGAGGGGCGCAACAGCA CAGTGCGGGCCCTTGGGAAGAACACAGAGCTGGCAGCCAGTCTCCTTTCCTAACTGTGAG TTCTGAACCCCTCCAGACCCCAGAGGGCTTTTTCTGTCCAGGAAGAACGTTGCAGATATG AGGACAGTGTGAAAAAAATTTCAAATATTTTCACCTGTATGATGGATCATCATGCAACCC GAATGCACATCGCCCCAACAGCTTTATTGAGACAATTCACATACCATGCAATTCACCCCA TTTTAAAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCATGGGAAACACGGGGTGGACGTGGAAGTCCAGGGGCCCCATGAAGCCCGGGATGGG CAGCTCCTTATCCGCCTGGATTTGAACCGCAAGGAGGTGCTGACCTTGAGGCTTCGGAAT GGAGGAACCCAGCCTGTCACCCTCACCCACCTCTTCCCACTCTGCCGGACTCCCCAGTTT GCCTTCTACAATGGAGACCAGGAGCTGCCCTGCCCCCTGGGCCCTGGTGAATCCTATGAG CTCCACGTCCACTGTAAGACCAGCTTCGTGGGCTACTTCCCAGCCACGGTGCTCTGGGAG CTGCTGGGACCTGGGGAGCCAGGTTCAGAAGGAGCTGGCACTTTCTACATTGCCCGCTTC TTGGCTGGCGTCGCCCACAGCCCCCTGGCAGCACAGCTGAAGCCCACGACTCCCTTCAAG CGGACCCAGATCACTGGAAACCCTGTGGTGACCAACCGGGTAGAGGAAGGAGAGCGACCG GACCGGTAACTCCTCCTTCCAACCCAGGCCAGGCTCAGGGGTGAGAGGGGCGCAACAGCA CAGTGCGGGCCCTTGGGAAGAACACAGAGCTGGCAGCCAGTCTCCTTTCCTAACTGTGAG TTCTGAACCCCTCCAGACCCCAGAGGGCTTTTTCTGTCCAGGAAGAACGTTGCAGATATG AGGACAGTGTGAAAAAAATTTCAAATATTTTCACCTGTATGATGGATCATCATGCAACCC GAATGCACATCGCCCCAACAGCTTTATTGAGACAATTCACATACCATGCAATTCACCCCA TTTTAAAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 265-384, + strand, RNAz p=0.978587 | |
| 417-530, - strand, RNAz p=0.918585 | |
| 606-704, - strand, RNAz p=0.678792 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-384, + strand, RNAz p=0.978587 | |
| 417-530, - strand, RNAz p=0.918585 | |
| 606-704, - strand, RNAz p=0.678792 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 226-530, gnl|bosTau2|chr3 (27396328-27396631) | |
| 226-530, gnl|canFam2|chr17 (65959977-65959707) | |
| 226-530, gnl|danRer3|chr6 (30390709-30390441) | |
| 226-530, gnl|echTel1|scaffold_310965 (75895-76169) | |
| 226-530, gnl|hg17|chr1 (112944494-112944765) | |
| 226-530, gnl|Hg17|chr1 (112944503-112944796) | |
| 226-530, gnl|loxAfr1|scaffold_5140 (13869-13598) | |
| 226-530, gnl|mm7|chr3 (104597199-104596925) | |
| 226-530, gnl|Mm7|chr3 (104597188-104596877) | |
| 226-530, gnl|monDom2|scaffold_0 (2583600-2583327) | |
| 226-530, gnl|oryCun1|scaffold_214506 (59304-59033) | |
| 226-530, gnl|panTro1|chr1 (109314378-109314107) | |
| 226-530, gnl|rheMac2|chr1 (115679094-115679365) | |
| 226-530, gnl|rn3|chr2 (200026288-200026014) | |
| 584-716, gnl|bosTau2|chr3 (27396658-27396786) | |
| 584-716, gnl|canFam2|chr17 (65959706-65959568) | |
| 584-716, gnl|echTel1|scaffold_310965 (76170-76363) | |
| 584-716, gnl|hg17|chr1 (112944766-112944956) | |
| 584-716, gnl|Hg17|chr1 (112944856-112944994) | |
| 584-716, gnl|loxAfr1|scaffold_5140 (13597-13395) | |
| 584-716, gnl|mm7|chr3 (104596924-104596768) | |
| 584-716, gnl|monDom2|scaffold_0 (2583326-2583123) | |
| 584-716, gnl|oryCun1|scaffold_214506 (59032-58852) | |
| 584-716, gnl|panTro1|chr1 (109314106-109313916) | |
| 584-716, gnl|rheMac2|chr1 (115679366-115679557) | |
| 584-716, gnl|rn3|chr2 (200026013-200025853) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-530, gnl|bosTau2|chr3 (27396328-27396631) | |
| 226-530, gnl|canFam2|chr17 (65959977-65959707) | |
| 226-530, gnl|danRer3|chr6 (30390709-30390441) | |
| 226-530, gnl|echTel1|scaffold_310965 (75895-76169) | |
| 226-530, gnl|hg17|chr1 (112944494-112944765) | |
| 226-530, gnl|Hg17|chr1 (112944503-112944796) | |
| 226-530, gnl|loxAfr1|scaffold_5140 (13869-13598) | |
| 226-530, gnl|mm7|chr3 (104597199-104596925) | |
| 226-530, gnl|Mm7|chr3 (104597188-104596877) | |
| 226-530, gnl|monDom2|scaffold_0 (2583600-2583327) | |
| 226-530, gnl|oryCun1|scaffold_214506 (59304-59033) | |
| 226-530, gnl|panTro1|chr1 (109314378-109314107) | |
| 226-530, gnl|rheMac2|chr1 (115679094-115679365) | |
| 226-530, gnl|rn3|chr2 (200026288-200026014) | |
| 584-716, gnl|bosTau2|chr3 (27396658-27396786) | |
| 584-716, gnl|canFam2|chr17 (65959706-65959568) | |
| 584-716, gnl|echTel1|scaffold_310965 (76170-76363) | |
| 584-716, gnl|hg17|chr1 (112944766-112944956) | |
| 584-716, gnl|Hg17|chr1 (112944856-112944994) | |
| 584-716, gnl|loxAfr1|scaffold_5140 (13597-13395) | |
| 584-716, gnl|mm7|chr3 (104596924-104596768) | |
| 584-716, gnl|monDom2|scaffold_0 (2583326-2583123) | |
| 584-716, gnl|oryCun1|scaffold_214506 (59032-58852) | |
| 584-716, gnl|panTro1|chr1 (109314106-109313916) | |
| 584-716, gnl|rheMac2|chr1 (115679366-115679557) | |
| 584-716, gnl|rn3|chr2 (200026013-200025853) |