Non-Coding RNA Search

Pig4-TMW8017E20

Sequence:


               
               GACCCAAGCAATTTTGCTAACTTCAGTGCTGTAAGTACTGCAAATGGGCTGATTGGGGAA
AAATCTTTCCATTTTCAGTTCGAAGAGTTTTCAGAGATTATTCTGGAATCTACCAAATTT
GCATTATTTCAGCTAAATTTACCAGCATATTAAAAATAATCTGTATTCTTCCCCCAATCA
AAAAAAAAAAAACCTGTTTGATTATTCTAAAAATACTTCTCTGCACAAATGATTTTAATA
GTCTTAATTCCTGGAATATATTCCAGTTATTTTATAAAACCCTTCTCTTAGTCTTGGTAA
ACAATATAAATAAAATTCTGACAATTACCATTTAGCAAATTATTATGGATAATGAACCAT
TAAAGAGTCATTTGCTGTATGCCCTCTGGATGCATAATAGCAATAATGAGTTTGTGTATT
TGTAACCATGTATGTGTGTTTATGTGTGAAGCCTTGATGATTTGTGGAAACCAGTCAGCA
GCTTTTATTATATGAGGAGATAGGACCAGGAATACTTTGAACAGAAAGTAAAATTCTGGT
TTCATGTAATAGTGTTTTTAAAAAGTAAATGTTGGTTTTATTTAAATAAATATGATAGTC
AAGGTCTAAACAGTCTTTTATTTGAAGGGCACTTACTTACTAGCCTTCCGTATTTATTCT
TCATCCTCCCAGAGCTGACTAAAATAGGCAGACCAGTAAAAATAATGAAAGGATGCTCTG
ATAAGGGCATAGGCCTCTAAGATCACAGAAATGGGGGAACCAACTGTGGTGTCAGTCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCAAGCAATTTTGCTAACTTCAGTGCTGTAAGTACTGCAAATGGGCTGATTGGGGAA
AAATCTTTCCATTTTCAGTTCGAAGAGTTTTCAGAGATTATTCTGGAATCTACCAAATTT
GCATTATTTCAGCTAAATTTACCAGCATATTAAAAATAATCTGTATTCTTCCCCCAATCA
AAAAAAAAAAAACCTGTTTGATTATTCTAAAAATACTTCTCTGCACAAATGATTTTAATA
GTCTTAATTCCTGGAATATATTCCAGTTATTTTATAAAACCCTTCTCTTAGTCTTGGTAA
ACAATATAAATAAAATTCTGACAATTACCATTTAGCAAATTATTATGGATAATGAACCAT
TAAAGAGTCATTTGCTGTATGCCCTCTGGATGCATAATAGCAATAATGAGTTTGTGTATT
TGTAACCATGTATGTGTGTTTATGTGTGAAGCCTTGATGATTTGTGGAAACCAGTCAGCA
GCTTTTATTATATGAGGAGATAGGACCAGGAATACTTTGAACAGAAAGTAAAATTCTGGT
TTCATGTAATAGTGTTTTTAAAAAGTAAATGTTGGTTTTATTTAAATAAATATGATAGTC
AAGGTCTAAACAGTCTTTTATTTGAAGGGCACTTACTTACTAGCCTTCCGTATTTATTCT
TCATCCTCCCAGAGCTGACTAAAATAGGCAGACCAGTAAAAATAATGAAAGGATGCTCTG
ATAAGGGCATAGGCCTCTAAGATCACAGAAATGGGGGAACCAACTGTGGTGTCAGTCCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.914823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.914823

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-281, gnl|bosTau2|chr3 (67180425-67180711)
               

               
               1-281, gnl|Hg17|chr1 (51538893-51538589)
               

               
               1-281, gnl|Mm7|chr4 (108759376-108759687)
               


               
               312-676, gnl|bosTau2|chr3 (67180706-67181073)
               

               
               312-676, gnl|Hg17|chr1 (51538594-51538246)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-281, gnl|bosTau2|chr3 (67180425-67180711)
               

               
               1-281, gnl|Hg17|chr1 (51538893-51538589)
               

               
               1-281, gnl|Mm7|chr4 (108759376-108759687)
               


               
               312-676, gnl|bosTau2|chr3 (67180706-67181073)
               

               
               312-676, gnl|Hg17|chr1 (51538594-51538246)

	1-281, gnl\|bosTau2\|chr3 (67180425-67180711)
	1-281, gnl\|Hg17\|chr1 (51538893-51538589)
	1-281, gnl\|Mm7\|chr4 (108759376-108759687)

	312-676, gnl\|bosTau2\|chr3 (67180706-67181073)
	312-676, gnl\|Hg17\|chr1 (51538594-51538246)