Non-Coding RNA Search

Pig4-TMW8018N21

Sequence:


               
               CTCTCCCTGTGAAGTCTGAACCTCACGACGTGGACAAGGGCTTCAGGATGGATACTGAAG
ACTTTCCTGGCCCCGAGCTGCCTCCTCCAGCAGCAGAGGCTGCCCCAAGTGTTCAGCCGA
TGCAGACTGTGAAGGCTTCCGCCTCTGGCCCCGTGGAAGAGGCCGTTTCTTTGGCCACTG
ACCCGCTGAAAAGAGTTCCCAGCGCTGGCAGCTCTACCTGCCGCCTGTCCTCTGTAGAGG
CCAACAATCCCCTGGTCACACAGTTACTCCAGGGCAACCTGCCTTTGGAGAAAGTGTTAC
CACAGCCCAGGTTGGGGGCCAAGCTCGAAATCAACAGGCTTCCTCTGCCTCTTCAAACTA
CCTCAGTGGGTAAAGCACCCCCAGAGAGGAACGTGGTTGAAATGCCCCCCAACTCTCCCA
ATCCGGACGGGAAGGGCTACTTGGCGGGAGCTCTTGCACCACTGCAAATGCGAAAGCGAG
AGAACCACCCCAAAAAGAGAGTGGCCAGGACTGTGGGGGAACACACTCAAGTGAAATGTG
AGCCAGGGAAAATTCTGGTGGACCCAGACGTGAAAGGGGTGCCTTGTGTCATCAACTCTG
GCATGAACCAGCTAGGACACAGCCAACCACTGAAGCAGGAGTGGCTGAACAAGCATTCCC
TGCAGAACAGAATCTCTCACAGCCCTGAGGTTAAACAGCAGAAGCGGCTGCTCCCCTCGT
GCAGCTTCCAGCAGAACTTGTTTCACGTGGACAAGAACGGCAGCTTCCACCCCGATGCTG
GCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCCTGTGAAGTCTGAACCTCACGACGTGGACAAGGGCTTCAGGATGGATACTGAAG
ACTTTCCTGGCCCCGAGCTGCCTCCTCCAGCAGCAGAGGCTGCCCCAAGTGTTCAGCCGA
TGCAGACTGTGAAGGCTTCCGCCTCTGGCCCCGTGGAAGAGGCCGTTTCTTTGGCCACTG
ACCCGCTGAAAAGAGTTCCCAGCGCTGGCAGCTCTACCTGCCGCCTGTCCTCTGTAGAGG
CCAACAATCCCCTGGTCACACAGTTACTCCAGGGCAACCTGCCTTTGGAGAAAGTGTTAC
CACAGCCCAGGTTGGGGGCCAAGCTCGAAATCAACAGGCTTCCTCTGCCTCTTCAAACTA
CCTCAGTGGGTAAAGCACCCCCAGAGAGGAACGTGGTTGAAATGCCCCCCAACTCTCCCA
ATCCGGACGGGAAGGGCTACTTGGCGGGAGCTCTTGCACCACTGCAAATGCGAAAGCGAG
AGAACCACCCCAAAAAGAGAGTGGCCAGGACTGTGGGGGAACACACTCAAGTGAAATGTG
AGCCAGGGAAAATTCTGGTGGACCCAGACGTGAAAGGGGTGCCTTGTGTCATCAACTCTG
GCATGAACCAGCTAGGACACAGCCAACCACTGAAGCAGGAGTGGCTGAACAAGCATTCCC
TGCAGAACAGAATCTCTCACAGCCCTGAGGTTAAACAGCAGAAGCGGCTGCTCCCCTCGT
GCAGCTTCCAGCAGAACTTGTTTCACGTGGACAAGAACGGCAGCTTCCACCCCGATGCTG
GCACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               236-355, - strand, RNAz p=0.977858
               

               
               396-515, - strand, RNAz p=0.508732

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-355, - strand, RNAz p=0.977858
               

               
               396-515, - strand, RNAz p=0.508732

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-786, gnl|bosTau2|chr24 (17479613-17478830)
               

               
               3-786, gnl|Hg17|chr18 (29578806-29579586)
               

               
               3-786, gnl|Mm7|chr18 (22900489-22901278)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-786, gnl|bosTau2|chr24 (17479613-17478830)
               

               
               3-786, gnl|Hg17|chr18 (29578806-29579586)
               

               
               3-786, gnl|Mm7|chr18 (22900489-22901278)

	236-355, - strand, RNAz p=0.977858
	396-515, - strand, RNAz p=0.508732

	3-786, gnl\|bosTau2\|chr24 (17479613-17478830)
	3-786, gnl\|Hg17\|chr18 (29578806-29579586)
	3-786, gnl\|Mm7\|chr18 (22900489-22901278)