Non-Coding RNA Search

Pig4-TMW8019J24

Sequence:


               
               GCATTTTCTTATGTTCTCCTTGCCCATAGCTTCATGCTTGTTCATTCCTTTTCATTAAAT
TCCTGGTTTCTTGCTTCCTTCATTTTCTCCTTGGTTGTGATCAAGCTTTTAAGCTTATAA
ATACTGTGTATGATGTACATTTATCCTGTGTGTTGCTATTATACAGTACTGACCACATGA
CAAAACAAGAAACAGTCAGGAGGTGGGGGAGTGGGTTGTCATAGCAACAGACTGATTTGC
AAAATGTAAGCAGTCTGCAGCAGTGCAAGGAGAGGAAAGAGCATGTCCCCAAAGTGTCAT
AAATCTGTCTAACCGCAGTTGATGCATGAGTTACATTTCTACACTAACCTGCAAGACACC
AAAAAGCCAAACAGAGACTTCTTTTAGGTAAAATAAACACTAGCTTTACTTAGGGTAAGT
AAAGGCATATTTTGAGCTTCAGTCAACTAAACTTTGATTTTTTTTTTCTTAGTTTATTCC
TTTGTCTGTCCATCATAATGGGATTACGTGTGGCAATGGAAAAAGGGAGAATACAAAATA
GAGGTGTGCACAGCGGGCTGCAGGGCTTAGCCCAGGCTAATTGACTATATCCAAATTAAG
TATGCCATCACTTGCAGTGTGACAAATGGATTTGACTTATTCAGTATACAAAAATAGAGA
TCATTAATGCAATCTTCAGTGGCAGGCCTAGTGAAGTGGGCCCAGGAAAACTGTCCCAGA
TTCTCGCTCTTGCATTTTCTCTCCTAAAAAGACACTCCGGCAATTCGTGTTCAAACAAGT
AAAACTGTTTTGAACACCAAAGCTCTTGTTCACTTCCTAAATTACCCCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTTTCTTATGTTCTCCTTGCCCATAGCTTCATGCTTGTTCATTCCTTTTCATTAAAT
TCCTGGTTTCTTGCTTCCTTCATTTTCTCCTTGGTTGTGATCAAGCTTTTAAGCTTATAA
ATACTGTGTATGATGTACATTTATCCTGTGTGTTGCTATTATACAGTACTGACCACATGA
CAAAACAAGAAACAGTCAGGAGGTGGGGGAGTGGGTTGTCATAGCAACAGACTGATTTGC
AAAATGTAAGCAGTCTGCAGCAGTGCAAGGAGAGGAAAGAGCATGTCCCCAAAGTGTCAT
AAATCTGTCTAACCGCAGTTGATGCATGAGTTACATTTCTACACTAACCTGCAAGACACC
AAAAAGCCAAACAGAGACTTCTTTTAGGTAAAATAAACACTAGCTTTACTTAGGGTAAGT
AAAGGCATATTTTGAGCTTCAGTCAACTAAACTTTGATTTTTTTTTTCTTAGTTTATTCC
TTTGTCTGTCCATCATAATGGGATTACGTGTGGCAATGGAAAAAGGGAGAATACAAAATA
GAGGTGTGCACAGCGGGCTGCAGGGCTTAGCCCAGGCTAATTGACTATATCCAAATTAAG
TATGCCATCACTTGCAGTGTGACAAATGGATTTGACTTATTCAGTATACAAAAATAGAGA
TCATTAATGCAATCTTCAGTGGCAGGCCTAGTGAAGTGGGCCCAGGAAAACTGTCCCAGA
TTCTCGCTCTTGCATTTTCTCTCCTAAAAAGACACTCCGGCAATTCGTGTTCAAACAAGT
AAAACTGTTTTGAACACCAAAGCTCTTGTTCACTTCCTAAATTACCCCTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               154-313, - strand, RNAz p=0.894505

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-313, - strand, RNAz p=0.894505

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-831, gnl|bosTau2|chr11 (46918051-46917224)
               

               
               1-831, gnl|Hg17|chr2 (66707984-66708812)
               

               
               1-831, gnl|Mm7|chr11 (18835942-18835106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-831, gnl|bosTau2|chr11 (46918051-46917224)
               

               
               1-831, gnl|Hg17|chr2 (66707984-66708812)
               

               
               1-831, gnl|Mm7|chr11 (18835942-18835106)

	1-831, gnl\|bosTau2\|chr11 (46918051-46917224)
	1-831, gnl\|Hg17\|chr2 (66707984-66708812)
	1-831, gnl\|Mm7\|chr11 (18835942-18835106)