Non-Coding RNA Search

Pig4-TMW8019M20

Sequence:


               
               AGGCTTCAAACTACAATAGGGTGCGTCTTGACTTTTTACTTTAGTAAAATTCAGTGTGGA
CTATCAGCTACTGAGGTGATCCCAGAATCAAATGGCCGTAGGAATAAACCTAACAAAGGG
GAAAAACCTTCATGTAAGTTCATAAATGGTGTATTAGCTTGGTTTGAGAGAGTTGAATCA
ATTTTCTTCAGATTCTTCAAATTGAATGTTGCTTTGCTATGTGAATTTAAATCTGTTCTT
CTTGATCATAGGTCAGGCTCACCAATCGTTTCTGCAGCCTTCCTGAGGGTTATGATCAGT
TGCTGAACTGGTGTTCAGATCCAGCTAGTCTGTGCTTGCCATACCATTTATGACTGTCTC
TGTGCATGTTGTCCCATACATACCCTTTGAGCTTCCAACCTTTGTAGAATTAGAATGAAG
GAAATAAAATGCACATCTGTCAGAGGTGGTTGGGAAAGAAATGTGAAAGATTCTTTTCAG
TTGGGATCTTAAATAGGAACTTAGCTCTTTTGCCATCCCTCTACTCCTCATTGTTGTGGA
TGGTGCTGGAGATATCCTCCTAGCACGATCTGAAGTGAAGTGGTCTTTTGGAAACATTTT
GACCTAATAGTGGGTTGGGTGTAACCTTTCTATTGGCAAGTAAAGGGGGGCTTGGGAATG
TGTGAGAATGTGTGTGTGGGGGGGGGTGATTTCAGAGTAATTAAGTGTGAGCCAGGTTGA
AGGGAGAGGTGCTTCATCAGGGTCTTATCCTCTTATGATTGCTATAAATAAATTCTTTAA
AGTATGGTTGTACTGTATCTGTTACCGCTATACAGCTGTATTGTTATTCTGGAAGGTAGT
TCAGCATTCTTGGATGTATCAGATGGCCTGATTAGCTGGAAAAAAATGGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTTCAAACTACAATAGGGTGCGTCTTGACTTTTTACTTTAGTAAAATTCAGTGTGGA
CTATCAGCTACTGAGGTGATCCCAGAATCAAATGGCCGTAGGAATAAACCTAACAAAGGG
GAAAAACCTTCATGTAAGTTCATAAATGGTGTATTAGCTTGGTTTGAGAGAGTTGAATCA
ATTTTCTTCAGATTCTTCAAATTGAATGTTGCTTTGCTATGTGAATTTAAATCTGTTCTT
CTTGATCATAGGTCAGGCTCACCAATCGTTTCTGCAGCCTTCCTGAGGGTTATGATCAGT
TGCTGAACTGGTGTTCAGATCCAGCTAGTCTGTGCTTGCCATACCATTTATGACTGTCTC
TGTGCATGTTGTCCCATACATACCCTTTGAGCTTCCAACCTTTGTAGAATTAGAATGAAG
GAAATAAAATGCACATCTGTCAGAGGTGGTTGGGAAAGAAATGTGAAAGATTCTTTTCAG
TTGGGATCTTAAATAGGAACTTAGCTCTTTTGCCATCCCTCTACTCCTCATTGTTGTGGA
TGGTGCTGGAGATATCCTCCTAGCACGATCTGAAGTGAAGTGGTCTTTTGGAAACATTTT
GACCTAATAGTGGGTTGGGTGTAACCTTTCTATTGGCAAGTAAAGGGGGGCTTGGGAATG
TGTGAGAATGTGTGTGTGGGGGGGGGTGATTTCAGAGTAATTAAGTGTGAGCCAGGTTGA
AGGGAGAGGTGCTTCATCAGGGTCTTATCCTCTTATGATTGCTATAAATAAATTCTTTAA
AGTATGGTTGTACTGTATCTGTTACCGCTATACAGCTGTATTGTTATTCTGGAAGGTAGT
TCAGCATTCTTGGATGTATCAGATGGCCTGATTAGCTGGAAAAAAATGGGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               532-648, + strand, RNAz p=0.967278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               532-648, + strand, RNAz p=0.967278

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-895, gnl|bosTau2|chr7 (1659271-1660138)
               

               
               1-895, gnl|Hg17|chr1 (224579101-224579845)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-895, gnl|bosTau2|chr7 (1659271-1660138)
               

               
               1-895, gnl|Hg17|chr1 (224579101-224579845)

	1-895, gnl\|bosTau2\|chr7 (1659271-1660138)
	1-895, gnl\|Hg17\|chr1 (224579101-224579845)