Non-Coding RNA Search

Pig4-TMW8020J01

Sequence:


               
               Ggcgacctacaccacagccacagcaaagccagatccttaacccactgagcgagggcaggg
attgaacttggaacctcatggttcctagtcagatttgtttctgctgtgccaggatgggaa
ctccGGTCTACTTATTTTTGATTGCCCTGATTTGAAATTAAGTCCTGTCACTGTGACATT
TCAGAGTTTGCCAAACTTGTGGAAGAATTCCGAAGCTTTGGAGTAAAGCTTATGCAGTCA
GCCATTGGCCGCAGCCATGGCACATTCGAATGGGTTGACAGCATGTTGGTTCAGGCCCTG
AAGTCTGGAGATTGGCTTTTGATGGACAATGTTAACTTCTGCAAGTAAGAACCTTTTATT
TAGTCACAAGTGGGCCTGTTGACATTTGGGATGTGCGTGTCAAAGTAGAAATCCAGCTGG
AAGCTCTGGTGTTTTTAATCCACTGTTTTCTTAACTAGGAGTACATACTCAGCTATATCC
TGTAGACCTCCCCCCGTGGTGAGCAATGGTAGTGGGTTATTGGCTGCAAGGTTTTAGTTG
TTGCTTACAAAATGGGATTACTTCTCTAGACAACATCCTTTGAGTTATACCCTCTTATTT
AACATCAAATTGCTTCCTTTCGTTAGGGTCATTCTTGAGTACAGATTTTTGAAATGGGGT
ATCTGACACAAGGCTGACATTTAGTAAATATGCATTCAGTATGTATCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               Ggcgacctacaccacagccacagcaaagccagatccttaacccactgagcgagggcaggg
attgaacttggaacctcatggttcctagtcagatttgtttctgctgtgccaggatgggaa
ctccGGTCTACTTATTTTTGATTGCCCTGATTTGAAATTAAGTCCTGTCACTGTGACATT
TCAGAGTTTGCCAAACTTGTGGAAGAATTCCGAAGCTTTGGAGTAAAGCTTATGCAGTCA
GCCATTGGCCGCAGCCATGGCACATTCGAATGGGTTGACAGCATGTTGGTTCAGGCCCTG
AAGTCTGGAGATTGGCTTTTGATGGACAATGTTAACTTCTGCAAGTAAGAACCTTTTATT
TAGTCACAAGTGGGCCTGTTGACATTTGGGATGTGCGTGTCAAAGTAGAAATCCAGCTGG
AAGCTCTGGTGTTTTTAATCCACTGTTTTCTTAACTAGGAGTACATACTCAGCTATATCC
TGTAGACCTCCCCCCGTGGTGAGCAATGGTAGTGGGTTATTGGCTGCAAGGTTTTAGTTG
TTGCTTACAAAATGGGATTACTTCTCTAGACAACATCCTTTGAGTTATACCCTCTTATTT
AACATCAAATTGCTTCCTTTCGTTAGGGTCATTCTTGAGTACAGATTTTTGAAATGGGGT
ATCTGACACAAGGCTGACATTTAGTAAATATGCATTCAGTATGTATCACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-350, + strand, RNAz p=0.50844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, + strand, RNAz p=0.50844

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               288-370, + strand, RNAmicro p=0.949535

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               288-370, + strand, RNAmicro p=0.949535

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               136-710, gnl|bosTau2|chr9 (33304641-33305232)
               

               
               136-710, gnl|Hg17|chr6 (90483307-90482679)
               

               
               136-710, gnl|Mm7|chr4 (32996650-32997196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-710, gnl|bosTau2|chr9 (33304641-33305232)
               

               
               136-710, gnl|Hg17|chr6 (90483307-90482679)
               

               
               136-710, gnl|Mm7|chr4 (32996650-32997196)

	136-710, gnl\|bosTau2\|chr9 (33304641-33305232)
	136-710, gnl\|Hg17\|chr6 (90483307-90482679)
	136-710, gnl\|Mm7\|chr4 (32996650-32997196)