Non-Coding RNA Search

Pig4-TMW8020O05

Sequence:


               
               GAGAGTTAGGCTCACCCCAGTTCCTTTGCTCCGAAGTTCACCTCGGATTGAGTACTTTAG
CTCTTGGTCCCACACAGGCTTCTCCTCCCCTGGATTCACCCCGCCGCCACCACCCACTCT
CTAAGCAGCTTCTTGAGGGCCGGCAGTGCTGCAATCCCTGAGCTGGCTCTCTCTGAAGGA
GAAAGGTGGCTGCACCCCCATGGTGAGGAGGAGCCTGACACTCCCCACCCCTGCCCCAGA
AAGCCTCCCTGGCCTCTGTGAAGCCAAGAGACTGGAAAGTCTCCAGGTTCCAAGGATGCC
CCAGCAACACTCATCCCACCCCAGGGTGTCTTAGCCCTGGATCAGTTTTGGGTTCTCCGT
CGTTTATGAGTGATGGTGGAAGGGCTGGCCTGACTGCTCTGTGGCCACGTACCTCTGTCC
CAGAAAAGAAAGGTAGGCCCAGGCCATCACTGGTATAAAGAGCTTTGCACGTGGTCCTAG
CCCCGGCCCTTCCTGCTGCTCCCCAGGCCCACCCAGTGCTGAAGATCACCTCAACCAAGT
GTGATCGAGCCTCAGGGCTGGCATCCCATAGGGCCCAGGGACTTAACAGCTTTCAGATCC
AGAACTGCTGTCCGCGGTTTGCCCCTAGTGCAGGTGCCTCCTGTCTGCCCTTCAGCTGCA
GGGTTGGGGGAGTGATCTTTGCCTGAGACAGCCCTGCTTCTACTACACCAGATAACGGCT
GTGGCTTTGGTGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGTTAGGCTCACCCCAGTTCCTTTGCTCCGAAGTTCACCTCGGATTGAGTACTTTAG
CTCTTGGTCCCACACAGGCTTCTCCTCCCCTGGATTCACCCCGCCGCCACCACCCACTCT
CTAAGCAGCTTCTTGAGGGCCGGCAGTGCTGCAATCCCTGAGCTGGCTCTCTCTGAAGGA
GAAAGGTGGCTGCACCCCCATGGTGAGGAGGAGCCTGACACTCCCCACCCCTGCCCCAGA
AAGCCTCCCTGGCCTCTGTGAAGCCAAGAGACTGGAAAGTCTCCAGGTTCCAAGGATGCC
CCAGCAACACTCATCCCACCCCAGGGTGTCTTAGCCCTGGATCAGTTTTGGGTTCTCCGT
CGTTTATGAGTGATGGTGGAAGGGCTGGCCTGACTGCTCTGTGGCCACGTACCTCTGTCC
CAGAAAAGAAAGGTAGGCCCAGGCCATCACTGGTATAAAGAGCTTTGCACGTGGTCCTAG
CCCCGGCCCTTCCTGCTGCTCCCCAGGCCCACCCAGTGCTGAAGATCACCTCAACCAAGT
GTGATCGAGCCTCAGGGCTGGCATCCCATAGGGCCCAGGGACTTAACAGCTTTCAGATCC
AGAACTGCTGTCCGCGGTTTGCCCCTAGTGCAGGTGCCTCCTGTCTGCCCTTCAGCTGCA
GGGTTGGGGGAGTGATCTTTGCCTGAGACAGCCCTGCTTCTACTACACCAGATAACGGCT
GTGGCTTTGGTGTGTGTGTGTGT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               32-191, - strand, RNAz p=0.979368
               

               
               332-445, - strand, RNAz p=0.550049
               

               
               354-658, - strand, RNAz p=0.999891
               

               
               490-642, - strand, RNAz p=0.958962

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-191, - strand, RNAz p=0.979368
               

               
               332-445, - strand, RNAz p=0.550049
               

               
               354-658, - strand, RNAz p=0.999891
               

               
               490-642, - strand, RNAz p=0.958962

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-741, gnl|bosTau2|chr13 (44637743-44638492)
               

               
               1-741, gnl|canFam2|chr24 (28248934-28249797)
               

               
               1-741, gnl|dasNov1|scaffold_8281 (1419-538)
               

               
               1-741, gnl|echTel1|scaffold_286911 (10527-11368)
               

               
               1-741, gnl|hg17|chr20 (34560087-34560882)
               

               
               1-741, gnl|Hg17|chr20 (34560271-34561002)
               

               
               1-741, gnl|loxAfr1|scaffold_16118 (24206-25078)
               

               
               1-741, gnl|mm7|chr2 (156488153-156488759)
               

               
               1-741, gnl|oryCun1|scaffold_215277 (86886-86143)
               

               
               1-741, gnl|panTro1|chr21 (36794294-36795091)
               

               
               1-741, gnl|rheMac2|chr10 (28004947-28004149)
               

               
               1-741, gnl|rn3|chr3 (147071005-147071647)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-741, gnl|bosTau2|chr13 (44637743-44638492)
               

               
               1-741, gnl|canFam2|chr24 (28248934-28249797)
               

               
               1-741, gnl|dasNov1|scaffold_8281 (1419-538)
               

               
               1-741, gnl|echTel1|scaffold_286911 (10527-11368)
               

               
               1-741, gnl|hg17|chr20 (34560087-34560882)
               

               
               1-741, gnl|Hg17|chr20 (34560271-34561002)
               

               
               1-741, gnl|loxAfr1|scaffold_16118 (24206-25078)
               

               
               1-741, gnl|mm7|chr2 (156488153-156488759)
               

               
               1-741, gnl|oryCun1|scaffold_215277 (86886-86143)
               

               
               1-741, gnl|panTro1|chr21 (36794294-36795091)
               

               
               1-741, gnl|rheMac2|chr10 (28004947-28004149)
               

               
               1-741, gnl|rn3|chr3 (147071005-147071647)

	32-191, - strand, RNAz p=0.979368
	332-445, - strand, RNAz p=0.550049
	354-658, - strand, RNAz p=0.999891
	490-642, - strand, RNAz p=0.958962

	1-741, gnl\|bosTau2\|chr13 (44637743-44638492)
	1-741, gnl\|canFam2\|chr24 (28248934-28249797)
	1-741, gnl\|dasNov1\|scaffold_8281 (1419-538)
	1-741, gnl\|echTel1\|scaffold_286911 (10527-11368)
	1-741, gnl\|hg17\|chr20 (34560087-34560882)
	1-741, gnl\|Hg17\|chr20 (34560271-34561002)
	1-741, gnl\|loxAfr1\|scaffold_16118 (24206-25078)
	1-741, gnl\|mm7\|chr2 (156488153-156488759)
	1-741, gnl\|oryCun1\|scaffold_215277 (86886-86143)
	1-741, gnl\|panTro1\|chr21 (36794294-36795091)
	1-741, gnl\|rheMac2\|chr10 (28004947-28004149)
	1-741, gnl\|rn3\|chr3 (147071005-147071647)