Non-Coding RNA Search

Pig4-TMW8020P03

Sequence:


               
               CTAAAAGGAAAAAAAAGGAAAAAAAAAAAAAGAGGAAAAAAAAAAAAATCCCTTCTCTTG
CTGCCAGTGGAGAGTTTTGGTCAGAGGGGACCACAGACAGACAGTAACCAGGGTAACCAG
CACAGCACTTTGAAAGTAAACAGGAAGCTCTTTTCTCCTCGAGTAGCTGGAGGAGATGCT
GGAGTTGCCATACACGCCGCTTAGGAGCTGGCTCTGTTCAAGGGCAAGGGAGAAAATGAA
GAGAGGGATGCTTGTGTATTCACCTGCTGTCTATTTTTCCACCTCAGAGCTTACCTCCGT
TTTTCTAACAGTTTCCAATTCTGTTTTCTCTATGCTAATGACACGCTCCCTCTTTAACGT
AGGTAAGGCTTTGCACTTCTCCCTGACCTGTAGTGGCATGAGAACACATAAGCTTTCCTA
AGATTACAGACAAGGTAGAACTAACCCTGGCCCTGCCATTAGCTGGACCCCCACCTCCTG
CCATCTCTGGCCACCAAGTCACTTTCCTTGTTTGCGGCTACACCTCAGTGGTGGGACTGC
CCGAGGGTAAGTTGCTCCGTAGACGGCCTTCACCTGCTCTGAGAGCTTTGCACAGCTGCC
AGCAGGCACTTTGCTGGCTAAGATGCATCCATTCCAAAGGGAAGTTTTAAAACCTATCAT
TTTAAAACTGGACCTGCCATCTGATAACTACAGTGTACCCATTCATCTACTCATCTTTGC
TCTTTGTTACAAAATAGTTTGATTCTTGCTAAGGAATGAAGTTGCATGTTTTGGACTTGC
CTCAATTGAGACCTGTGGACCTGGGGATCTGGTGCCGCTTGGTACCTGAGCGGGGGAAAA
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAAGGAAAAAAAAGGAAAAAAAAAAAAAGAGGAAAAAAAAAAAAATCCCTTCTCTTG
CTGCCAGTGGAGAGTTTTGGTCAGAGGGGACCACAGACAGACAGTAACCAGGGTAACCAG
CACAGCACTTTGAAAGTAAACAGGAAGCTCTTTTCTCCTCGAGTAGCTGGAGGAGATGCT
GGAGTTGCCATACACGCCGCTTAGGAGCTGGCTCTGTTCAAGGGCAAGGGAGAAAATGAA
GAGAGGGATGCTTGTGTATTCACCTGCTGTCTATTTTTCCACCTCAGAGCTTACCTCCGT
TTTTCTAACAGTTTCCAATTCTGTTTTCTCTATGCTAATGACACGCTCCCTCTTTAACGT
AGGTAAGGCTTTGCACTTCTCCCTGACCTGTAGTGGCATGAGAACACATAAGCTTTCCTA
AGATTACAGACAAGGTAGAACTAACCCTGGCCCTGCCATTAGCTGGACCCCCACCTCCTG
CCATCTCTGGCCACCAAGTCACTTTCCTTGTTTGCGGCTACACCTCAGTGGTGGGACTGC
CCGAGGGTAAGTTGCTCCGTAGACGGCCTTCACCTGCTCTGAGAGCTTTGCACAGCTGCC
AGCAGGCACTTTGCTGGCTAAGATGCATCCATTCCAAAGGGAAGTTTTAAAACCTATCAT
TTTAAAACTGGACCTGCCATCTGATAACTACAGTGTACCCATTCATCTACTCATCTTTGC
TCTTTGTTACAAAATAGTTTGATTCTTGCTAAGGAATGAAGTTGCATGTTTTGGACTTGC
CTCAATTGAGACCTGTGGACCTGGGGATCTGGTGCCGCTTGGTACCTGAGCGGGGGAAAA
A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               439-558, - strand, RNAz p=0.67823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-558, - strand, RNAz p=0.67823

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               227-838, gnl|bosTau2|chr6 (48222687-48223290)
               

               
               227-838, gnl|Hg17|chr4 (78311668-78312259)
               

               
               227-838, gnl|Mm7|chr5 (93157171-93158035)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-838, gnl|bosTau2|chr6 (48222687-48223290)
               

               
               227-838, gnl|Hg17|chr4 (78311668-78312259)
               

               
               227-838, gnl|Mm7|chr5 (93157171-93158035)

	227-838, gnl\|bosTau2\|chr6 (48222687-48223290)
	227-838, gnl\|Hg17\|chr4 (78311668-78312259)
	227-838, gnl\|Mm7\|chr5 (93157171-93158035)