Pig4-TMW8021H14
|
GGCTGGAGTAGACAGTCAATTTAAAAGATGTACGTGTATGGGTTGTATCAGAGAGAGAGG
ATCCCAACTTGTGGTCAGAAGGGTGTTTACTCCTGTGTTCTGCTAGGGTTTATCAGGCTA
TTCCTTGCTGGAAGCTGCTTATCCAGTTTGGATTGTACCCCTTAAGGTAGATGGAACTTT
ACCTTCAGCCTTTCAAATCAAAAAGGAAAATCTTGGAAAGTAAGAGTTTTGCTAGTGTCT
TTTGTAGGACCTCAGTGATGGAAATTGGGATGAAAAGTCAGGGAGTCGTGTTTGGCTGAT
GGAAATTAGAAGTTGGGCTCATAGTAAATTGCATTTGCCTCTCTTTAACAGCTTGTAGAC
CACCTCACATTTGTTATCTTATTTGAACTTTATTATTGTTCAATGAGGAAAAATGGCTAT
CATTATTATTACCATTATTATCAATATCACCTTCCATTTCATAGATGATAAAATGGAGGC
TCTGAGAATTTATGAGATTTTCCCCAAATTGCTAAACTATTACGTCTGAATCTGAGTGTA
TGCCAAGATCTCTGTTCCTGGACCCTGTGCTTTTGCCTCTGAAGTATTCTGTTGCCAAGC
CTGGCTTTCTAAGGACTTCTCTGTCTTTTATTATTTCATGGTTGACATTCTAGCAGAATT
AAAGATGCTTTACAAATGCATTTTATTTAATACTTCCATAGCCCATATAGGAAATGGTGT
TGAAGTTACAAACTTTGCTTGCTAAAATCAACACAGTTTGTGAAATAGGCCTTACCTCTC
ATAAACTCCCATAGCCCCCCGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCTGGAGTAGACAGTCAATTTAAAAGATGTACGTGTATGGGTTGTATCAGAGAGAGAGG
ATCCCAACTTGTGGTCAGAAGGGTGTTTACTCCTGTGTTCTGCTAGGGTTTATCAGGCTA
TTCCTTGCTGGAAGCTGCTTATCCAGTTTGGATTGTACCCCTTAAGGTAGATGGAACTTT
ACCTTCAGCCTTTCAAATCAAAAAGGAAAATCTTGGAAAGTAAGAGTTTTGCTAGTGTCT
TTTGTAGGACCTCAGTGATGGAAATTGGGATGAAAAGTCAGGGAGTCGTGTTTGGCTGAT
GGAAATTAGAAGTTGGGCTCATAGTAAATTGCATTTGCCTCTCTTTAACAGCTTGTAGAC
CACCTCACATTTGTTATCTTATTTGAACTTTATTATTGTTCAATGAGGAAAAATGGCTAT
CATTATTATTACCATTATTATCAATATCACCTTCCATTTCATAGATGATAAAATGGAGGC
TCTGAGAATTTATGAGATTTTCCCCAAATTGCTAAACTATTACGTCTGAATCTGAGTGTA
TGCCAAGATCTCTGTTCCTGGACCCTGTGCTTTTGCCTCTGAAGTATTCTGTTGCCAAGC
CTGGCTTTCTAAGGACTTCTCTGTCTTTTATTATTTCATGGTTGACATTCTAGCAGAATT
AAAGATGCTTTACAAATGCATTTTATTTAATACTTCCATAGCCCATATAGGAAATGGTGT
TGAAGTTACAAACTTTGCTTGCTAAAATCAACACAGTTTGTGAAATAGGCCTTACCTCTC
ATAAACTCCCATAGCCCCCCGAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
21-516, gnl|bosTau2|chr3 (57252671-57252202) |
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21-516, gnl|canFam2|chr5 (51736790-51736278) |
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21-516, gnl|dasNov1|scaffold_22 (321146-320630) |
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21-516, gnl|echTel1|scaffold_300059 (283583-284091) |
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21-516, gnl|hg17|chr1 (61391846-61392332) |
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21-516, gnl|Hg17|chr1 (61391849-61392330) |
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21-516, gnl|loxAfr1|scaffold_82 (137080-136576) |
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21-516, gnl|mm7|chr4 (97290136-97290554) |
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21-516, gnl|Mm7|chr4 (97290135-97290552) |
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21-516, gnl|panTro1|chr1 (59707011-59707501) |
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21-516, gnl|rheMac2|chr1 (64016198-64016684) |
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21-516, gnl|rn3|chr5 (118296404-118296818) |
| |
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586-798, gnl|bosTau2|chr3 (57252016-57251804) |
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586-798, gnl|Hg17|chr1 (61392400-61392603) |
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586-798, gnl|Mm7|chr4 (97290619-97290822) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
21-516, gnl|bosTau2|chr3 (57252671-57252202) |
|
21-516, gnl|canFam2|chr5 (51736790-51736278) |
|
21-516, gnl|dasNov1|scaffold_22 (321146-320630) |
|
21-516, gnl|echTel1|scaffold_300059 (283583-284091) |
|
21-516, gnl|hg17|chr1 (61391846-61392332) |
|
21-516, gnl|Hg17|chr1 (61391849-61392330) |
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21-516, gnl|loxAfr1|scaffold_82 (137080-136576) |
|
21-516, gnl|mm7|chr4 (97290136-97290554) |
|
21-516, gnl|Mm7|chr4 (97290135-97290552) |
|
21-516, gnl|panTro1|chr1 (59707011-59707501) |
|
21-516, gnl|rheMac2|chr1 (64016198-64016684) |
|
21-516, gnl|rn3|chr5 (118296404-118296818) |
| |
|
586-798, gnl|bosTau2|chr3 (57252016-57251804) |
|
586-798, gnl|Hg17|chr1 (61392400-61392603) |
|
586-798, gnl|Mm7|chr4 (97290619-97290822) |
