Pig4-TMW8021L04
|
TTCCTTCTAGGCAGGTGACTTGACCTCTGGGGTGCACATGAGGTATCTGGAGAACACCTC
CATAACACCTTGGAATATATACTGTGGACACGAGTTAGCATATTGTGCTTCAGAGACACG
TTTTGTAAAGTAATGATTTGGTATCTGCCCTTGACGATTTTATAATTTAAAGGAAAGCAC
TATAAACATTGGCCAGCTCTGTGTCTATTCCTGTATCTACACGCCTGTACAAGTGTACGC
AGACACATCTGGTAGCAGTGTCGGAAATCTTGCAGGCTCTGTGGGGGTGAGTGATACATC
TAGATCAGCCTCTGCTTAATTAGAGGACTTAGAGAAGCAGGTGAAATTTAAAGAGTGATT
AAAAAACTGGGAAACAAAAGTCTGGATGTGAGAGATAAAAAAGTAGAGACTTGTGTGGGC
ACAGAAACTAGACAAGAGCATTCTGCTGTGAGAAGGGTCAGGGATCATGAGTTCAGCTCC
TGAATGTCTTTGAAATCCACTGTGAGAACTTTGGATGTCTTCGGAAACTGGGAGCCACCA
TTGGGAAAGGTGGTGTTTTAAGTATTTCTCTAGGGAAATAATTTTGGTGCCCATGTGATT
GTACTTCCTCTTCTTTGTAGATGTTGCCGTAAAGAGTAGGATTTGTGAATCTAGGAGAGC
TTTGTGGCAAACTTGGTCTTGGTTTCTTTCTCTTCTCTGCTTGGTTTATAGAAATTGTAC
ACCTAGATCTAGGATTGGTTTGCCAGTAGTGGTAGGTCTGCTCTCTATTTTTGTGAATTC
TTGGTGGCTATTGATGTTAGAACCACAGGGGTAAGACATTCTTAAAGCTTTACCACCCCC
AAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCTTCTAGGCAGGTGACTTGACCTCTGGGGTGCACATGAGGTATCTGGAGAACACCTC
CATAACACCTTGGAATATATACTGTGGACACGAGTTAGCATATTGTGCTTCAGAGACACG
TTTTGTAAAGTAATGATTTGGTATCTGCCCTTGACGATTTTATAATTTAAAGGAAAGCAC
TATAAACATTGGCCAGCTCTGTGTCTATTCCTGTATCTACACGCCTGTACAAGTGTACGC
AGACACATCTGGTAGCAGTGTCGGAAATCTTGCAGGCTCTGTGGGGGTGAGTGATACATC
TAGATCAGCCTCTGCTTAATTAGAGGACTTAGAGAAGCAGGTGAAATTTAAAGAGTGATT
AAAAAACTGGGAAACAAAAGTCTGGATGTGAGAGATAAAAAAGTAGAGACTTGTGTGGGC
ACAGAAACTAGACAAGAGCATTCTGCTGTGAGAAGGGTCAGGGATCATGAGTTCAGCTCC
TGAATGTCTTTGAAATCCACTGTGAGAACTTTGGATGTCTTCGGAAACTGGGAGCCACCA
TTGGGAAAGGTGGTGTTTTAAGTATTTCTCTAGGGAAATAATTTTGGTGCCCATGTGATT
GTACTTCCTCTTCTTTGTAGATGTTGCCGTAAAGAGTAGGATTTGTGAATCTAGGAGAGC
TTTGTGGCAAACTTGGTCTTGGTTTCTTTCTCTTCTCTGCTTGGTTTATAGAAATTGTAC
ACCTAGATCTAGGATTGGTTTGCCAGTAGTGGTAGGTCTGCTCTCTATTTTTGTGAATTC
TTGGTGGCTATTGATGTTAGAACCACAGGGGTAAGACATTCTTAAAGCTTTACCACCCCC
AAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
25-703, gnl|bosTau2|chr7 (31481349-31480670) |
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25-703, gnl|Hg17|chr5 (135501312-135502108) |
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25-703, gnl|Mm7|chr13 (55799185-55800097) |
| |
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705-842, gnl|bosTau2|chr7 (31480645-31480510) |
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705-842, gnl|canFam2|chr11 (27044857-27044975) |
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705-842, gnl|dasNov1|scaffold_173953 (2049-2177) |
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705-842, gnl|hg17|chr5 (135502131-135502268) |
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705-842, gnl|Hg17|chr5 (135502133-135502277) |
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705-842, gnl|loxAfr1|scaffold_29336 (23419-23558) |
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705-842, gnl|mm7|chr13 (55800120-55800236) |
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705-842, gnl|Mm7|chr13 (55800122-55800246) |
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705-842, gnl|oryCun1|scaffold_197149 (3599-3472) |
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705-842, gnl|panTro1|chr4 (142094082-142094216) |
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705-842, gnl|rheMac2|chr6 (132603167-132603307) |
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705-842, gnl|rn3|chr17 (13833294-13833203) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
25-703, gnl|bosTau2|chr7 (31481349-31480670) |
|
25-703, gnl|Hg17|chr5 (135501312-135502108) |
|
25-703, gnl|Mm7|chr13 (55799185-55800097) |
| |
|
705-842, gnl|bosTau2|chr7 (31480645-31480510) |
|
705-842, gnl|canFam2|chr11 (27044857-27044975) |
|
705-842, gnl|dasNov1|scaffold_173953 (2049-2177) |
|
705-842, gnl|hg17|chr5 (135502131-135502268) |
|
705-842, gnl|Hg17|chr5 (135502133-135502277) |
|
705-842, gnl|loxAfr1|scaffold_29336 (23419-23558) |
|
705-842, gnl|mm7|chr13 (55800120-55800236) |
|
705-842, gnl|Mm7|chr13 (55800122-55800246) |
|
705-842, gnl|oryCun1|scaffold_197149 (3599-3472) |
|
705-842, gnl|panTro1|chr4 (142094082-142094216) |
|
705-842, gnl|rheMac2|chr6 (132603167-132603307) |
|
705-842, gnl|rn3|chr17 (13833294-13833203) |
