Non-Coding RNA Search

Pig4-TMW8021P04

Sequence:


               
               CAGGAATTATCATCGATGTGCCTCTAGAAAAGATTGTTTCACAGCTGTGAATGTGATGTT
GGCCTCCAGCACCTGCCAGTAAAGCTAGGGTGAGTCACATAAAGAGTCAGGGCCAGATCT
GACGGTAATTCAGCCATTCACAGCGTTGCCTTGGCTGTTACTGCTCCTGATTACAGTCTG
TCCCATTTGATATTCTGTCAGTGGAAACACAGACTCACCTTCTTTTTGCCTTTTGCTATT
TATTGTTTTCACTGTATCGAGCACCTCACTAAATGCCATATTTATTTACTTCATCCAATC
TTTATTATTACTATCACAGCATTATAGTGTCTGTGATTCATGTACTGTTATCGTTACATT
TGATTGTTATTGCTCTTGTTTCCCAAATTCAGAAACTGAGGTTCAGAGAGGTTAGGTAAC
TTGCTTGAGTCACACAGCTAGCGATGCAAACAGAGCTCGGAATTTAGGCCTTTTCCCATC
TGAAGATGAGGCTCCTGACCCATCCATCATGCATCTGGAACCGAACTTGGAAGCAGCAAT
TTCCAGCCCCTCATTTTAAGGATGCACATTTGTGGCCCATGCGCTCAGACCCCTACACTC
TTCCCGTTGTGATACTTGACATCACAGTCCCCTTTCTCTGACAGTGGCTGATCAGTCACA
TCGGTCCTCCTGAGTGGGTTTGCTCCAGCAGAATTGGCTCTGTCTAGAGAAACAAAACGA
GTTGAGTTTTTACAAGAGTACAAAATGGGATCAGAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTATCATCGATGTGCCTCTAGAAAAGATTGTTTCACAGCTGTGAATGTGATGTT
GGCCTCCAGCACCTGCCAGTAAAGCTAGGGTGAGTCACATAAAGAGTCAGGGCCAGATCT
GACGGTAATTCAGCCATTCACAGCGTTGCCTTGGCTGTTACTGCTCCTGATTACAGTCTG
TCCCATTTGATATTCTGTCAGTGGAAACACAGACTCACCTTCTTTTTGCCTTTTGCTATT
TATTGTTTTCACTGTATCGAGCACCTCACTAAATGCCATATTTATTTACTTCATCCAATC
TTTATTATTACTATCACAGCATTATAGTGTCTGTGATTCATGTACTGTTATCGTTACATT
TGATTGTTATTGCTCTTGTTTCCCAAATTCAGAAACTGAGGTTCAGAGAGGTTAGGTAAC
TTGCTTGAGTCACACAGCTAGCGATGCAAACAGAGCTCGGAATTTAGGCCTTTTCCCATC
TGAAGATGAGGCTCCTGACCCATCCATCATGCATCTGGAACCGAACTTGGAAGCAGCAAT
TTCCAGCCCCTCATTTTAAGGATGCACATTTGTGGCCCATGCGCTCAGACCCCTACACTC
TTCCCGTTGTGATACTTGACATCACAGTCCCCTTTCTCTGACAGTGGCTGATCAGTCACA
TCGGTCCTCCTGAGTGGGTTTGCTCCAGCAGAATTGGCTCTGTCTAGAGAAACAAAACGA
GTTGAGTTTTTACAAGAGTACAAAATGGGATCAGAGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               462-579, - strand, RNAz p=0.781874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               462-579, - strand, RNAz p=0.781874

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               239-579, gnl|bosTau2|chr9 (57647200-57647540)
               

               
               239-579, gnl|Hg17|chr6 (157905018-157905365)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-579, gnl|bosTau2|chr9 (57647200-57647540)
               

               
               239-579, gnl|Hg17|chr6 (157905018-157905365)

	239-579, gnl\|bosTau2\|chr9 (57647200-57647540)
	239-579, gnl\|Hg17\|chr6 (157905018-157905365)