Non-Coding RNA Search

Pig4-TMW8022J18

Sequence:


               
               GTGTCCTCCAGCACCCATGTAACCTCCTCCAGGAAGCTTCCCATGATCTCTCCCTCCTCT
CTCAGGGATGTTGCATTAGAGCTATGCTTGCTAAGCAGAACCCACTGCATACACTGACTG
TTTATGCCACAGTCCAGTAAAGGTCCTGATAAGTCCTGCAGTAGAAAAGCCTGGTTTCAA
GTGTAGAGCTTCTGCACTGCAGGAGTTCTCAGGACCTTGACACATTGATTACTACCCAGA
TTGAGAACTGTGGGGCAAGGGCAGGGTCTTGGACACCCCTGCGTTCCATGGGTATTAATC
ATGTGCCAGCAGGAGTCATTGGGCAGATAAATGAGGCAAGAGATGAGTGACATGTTAACC
AAAGGAGGAAGTACAAAGACAAGGACCTGCCCTGACATCCGTGGATGTTTTCCCTTATCG
GGTCTTCTGAGTCCACTACTTCCTTACTGTTCCTTGCACTCTCTCAGCAAGATCTGAGCT
CAGGGTCTTTGCACTGGCTGCTCCTTCTGACTGAACTGTTCCCTGCAGACCTCCCTGCGG
CTCCGTTCCTCAGCTGCTTCAAGTCTTTATTCTGAATGAGGCCTTCCCAAGACTGCTTTT
AAAAATTGCAACCTTAGCCCAAGCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCCTCCAGCACCCATGTAACCTCCTCCAGGAAGCTTCCCATGATCTCTCCCTCCTCT
CTCAGGGATGTTGCATTAGAGCTATGCTTGCTAAGCAGAACCCACTGCATACACTGACTG
TTTATGCCACAGTCCAGTAAAGGTCCTGATAAGTCCTGCAGTAGAAAAGCCTGGTTTCAA
GTGTAGAGCTTCTGCACTGCAGGAGTTCTCAGGACCTTGACACATTGATTACTACCCAGA
TTGAGAACTGTGGGGCAAGGGCAGGGTCTTGGACACCCCTGCGTTCCATGGGTATTAATC
ATGTGCCAGCAGGAGTCATTGGGCAGATAAATGAGGCAAGAGATGAGTGACATGTTAACC
AAAGGAGGAAGTACAAAGACAAGGACCTGCCCTGACATCCGTGGATGTTTTCCCTTATCG
GGTCTTCTGAGTCCACTACTTCCTTACTGTTCCTTGCACTCTCTCAGCAAGATCTGAGCT
CAGGGTCTTTGCACTGGCTGCTCCTTCTGACTGAACTGTTCCCTGCAGACCTCCCTGCGG
CTCCGTTCCTCAGCTGCTTCAAGTCTTTATTCTGAATGAGGCCTTCCCAAGACTGCTTTT
AAAAATTGCAACCTTAGCCCAAGCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-228, - strand, RNAz p=0.988432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-228, - strand, RNAz p=0.988432

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               172-306, - strand, RNAmicro p=0.999999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-306, - strand, RNAmicro p=0.999999

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               7-434, gnl|bosTau2|chr7 (15523748-15524156)
               

               
               7-434, gnl|canFam2|chr20 (57600179-57599664)
               

               
               7-434, gnl|hg17|chr19 (5175244-5175772)
               

               
               7-434, gnl|Hg17|chr19 (5175802-5175313)
               

               
               7-434, gnl|loxAfr1|scaffold_64102 (780-226)
               

               
               7-434, gnl|panTro1|chr20 (5508236-5508764)
               

               
               7-434, gnl|rheMac2|chr19 (5134774-5135301)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-434, gnl|bosTau2|chr7 (15523748-15524156)
               

               
               7-434, gnl|canFam2|chr20 (57600179-57599664)
               

               
               7-434, gnl|hg17|chr19 (5175244-5175772)
               

               
               7-434, gnl|Hg17|chr19 (5175802-5175313)
               

               
               7-434, gnl|loxAfr1|scaffold_64102 (780-226)
               

               
               7-434, gnl|panTro1|chr20 (5508236-5508764)
               

               
               7-434, gnl|rheMac2|chr19 (5134774-5135301)

	7-434, gnl\|bosTau2\|chr7 (15523748-15524156)
	7-434, gnl\|canFam2\|chr20 (57600179-57599664)
	7-434, gnl\|hg17\|chr19 (5175244-5175772)
	7-434, gnl\|Hg17\|chr19 (5175802-5175313)
	7-434, gnl\|loxAfr1\|scaffold_64102 (780-226)
	7-434, gnl\|panTro1\|chr20 (5508236-5508764)
	7-434, gnl\|rheMac2\|chr19 (5134774-5135301)