Non-Coding RNA Search

Pig4-TMW8025A22

Sequence:


               
               CGAGGACCGAGACTTTCAGGGTAATCACTTTGATCAGTATGAAGAAGGACATTTGGAAAT
TGAACAAGCATCACTTGACAAGCCTATAGAATCGGTAAGATCAGTTCTTAGTTTTGGGTC
ATAGCTAGTTAGGCAGTGTTCGTGTGACACTTGACGTGAATGAAGTTAAACTTATTAATA
ACTTATAGTACAGTTTAGAGCTGTTTTCTTGCATGCTCTACAGTAATCAAGTAGAGTTTG
GGTTGTAATCTAATATGTAATATGTTGGGAAATTATGGGAAATCTAGAAGCAATTTAGAA
TTTTTATGGAAAAATATCATTTTGGCCCATATTGATATTCTGTTAAAGATAGCAAGTTGA
AGTTCAGTGTTTTTATAAATTGAATAAAGGAGTAAAATGTATTTTGATCCTTTAAAAGCT
TCACCTTTCCTGGGCAACACAATCATGTGTGAAATGTTCACTAGGAAAAGTTACTGATAT
GTATTGTTCACCAGACTCTTGTGAAACATGGTAATTTTGGTTTCTGTGGCTTAAGAGATG
TCTGGTTTTTGTCACAAGTTGATTCTATCTCTTCATACGACTTAGTTTTAAATATTGATG
CAAAACAGCAGAACAGGGAGATTTATTTCCTTGACCCTTAATTTTTGAACATTACTTTTA
TTATGAGAAGCCCTTTATTTTCAGATTACACAGTTCATTGTTAAAATGTCTAAACTTGTC
AGTATTGTCAGTATTTAATATTTGTGCTTAAGTGGACATATTTAATAAAGGTTTCAGGGA
GTTATTGGTAAACTTGAATGAAAAATCAATGAGAGAATCTCTATAGCAGTCACATCCCCC
TTCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGACCGAGACTTTCAGGGTAATCACTTTGATCAGTATGAAGAAGGACATTTGGAAAT
TGAACAAGCATCACTTGACAAGCCTATAGAATCGGTAAGATCAGTTCTTAGTTTTGGGTC
ATAGCTAGTTAGGCAGTGTTCGTGTGACACTTGACGTGAATGAAGTTAAACTTATTAATA
ACTTATAGTACAGTTTAGAGCTGTTTTCTTGCATGCTCTACAGTAATCAAGTAGAGTTTG
GGTTGTAATCTAATATGTAATATGTTGGGAAATTATGGGAAATCTAGAAGCAATTTAGAA
TTTTTATGGAAAAATATCATTTTGGCCCATATTGATATTCTGTTAAAGATAGCAAGTTGA
AGTTCAGTGTTTTTATAAATTGAATAAAGGAGTAAAATGTATTTTGATCCTTTAAAAGCT
TCACCTTTCCTGGGCAACACAATCATGTGTGAAATGTTCACTAGGAAAAGTTACTGATAT
GTATTGTTCACCAGACTCTTGTGAAACATGGTAATTTTGGTTTCTGTGGCTTAAGAGATG
TCTGGTTTTTGTCACAAGTTGATTCTATCTCTTCATACGACTTAGTTTTAAATATTGATG
CAAAACAGCAGAACAGGGAGATTTATTTCCTTGACCCTTAATTTTTGAACATTACTTTTA
TTATGAGAAGCCCTTTATTTTCAGATTACACAGTTCATTGTTAAAATGTCTAAACTTGTC
AGTATTGTCAGTATTTAATATTTGTGCTTAAGTGGACATATTTAATAAAGGTTTCAGGGA
GTTATTGGTAAACTTGAATGAAAAATCAATGAGAGAATCTCTATAGCAGTCACATCCCCC
TTCCCCCCAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47218802|emb|CAG02787.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47218802|emb|CAG02787.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-459, + strand, RNAz p=0.92212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-459, + strand, RNAz p=0.92212

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-832, gnl|bosTau2|chr19 (37802467-37803298)
               

               
               14-832, gnl|Hg17|chr17 (39907803-39906891)
               

               
               14-832, gnl|Mm7|chr11 (102647401-102646416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-832, gnl|bosTau2|chr19 (37802467-37803298)
               

               
               14-832, gnl|Hg17|chr17 (39907803-39906891)
               

               
               14-832, gnl|Mm7|chr11 (102647401-102646416)

	14-832, gnl\|bosTau2\|chr19 (37802467-37803298)
	14-832, gnl\|Hg17\|chr17 (39907803-39906891)
	14-832, gnl\|Mm7\|chr11 (102647401-102646416)