Non-Coding RNA Search

Pig4-TMW8028N20

Sequence:


               
               CTTTTCTGTTCTCTTCATTTGGCTCTGCATTATTTGATAAGACTCTGTCTGTCTGTCCTT
GTCCTTTGTACTTGAAAGGAGATGCAGTCTGTGTTCTGAATAGACTAGGCTGTGACCCGG
GGGGTGCTTTCTTTGGTGAGCATAGCTTGAGAAACAGAGGTGATCAGGATCTGTCTCCAG
GAATTTCCATTCTTCCCAAAGACCCATTTCCAAATGTCAAATATAAACTAAGCCCAAGAA
ATAGCAAAAAGACAAAAAAAAAAAAAAAAAAGTGACTGTGAATTGAAAATATTCATAAAA
ATATCATGTATATATATTTGAAATTGGTTATAGGGAGGAAACCAAGGCTCCAAGAAATCA
TGGGCAGTTCAGAGTTTAGTAGGTGTGATTGAATTGCTGTGTCTATCAGAAAAGAACTTA
TCTTCCAAGTTAGCTGTCTGCTTCACTTGGTCAATGCTCATGTTTCTGTTCTACCTTGAT
GTTTACTTTTACTTTTACTTTTTGTTTTTGTCCTTTTAGGGCTGTGCCTGCAGCATATGG
AGGTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTGTTCTCTTCATTTGGCTCTGCATTATTTGATAAGACTCTGTCTGTCTGTCCTT
GTCCTTTGTACTTGAAAGGAGATGCAGTCTGTGTTCTGAATAGACTAGGCTGTGACCCGG
GGGGTGCTTTCTTTGGTGAGCATAGCTTGAGAAACAGAGGTGATCAGGATCTGTCTCCAG
GAATTTCCATTCTTCCCAAAGACCCATTTCCAAATGTCAAATATAAACTAAGCCCAAGAA
ATAGCAAAAAGACAAAAAAAAAAAAAAAAAAGTGACTGTGAATTGAAAATATTCATAAAA
ATATCATGTATATATATTTGAAATTGGTTATAGGGAGGAAACCAAGGCTCCAAGAAATCA
TGGGCAGTTCAGAGTTTAGTAGGTGTGATTGAATTGCTGTGTCTATCAGAAAAGAACTTA
TCTTCCAAGTTAGCTGTCTGCTTCACTTGGTCAATGCTCATGTTTCTGTTCTACCTTGAT
GTTTACTTTTACTTTTACTTTTTGTTTTTGTCCTTTTAGGGCTGTGCCTGCAGCATATGG
AGGTTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               118-236, + strand, RNAz p=0.629349
               

               
               266-366, + strand, RNAz p=0.602828

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-236, + strand, RNAz p=0.629349
               

               
               266-366, + strand, RNAz p=0.602828

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               2-236, gnl|bosTau2|chr10 (49321321-49321091)
               

               
               2-236, gnl|canFam2|chr8 (41096182-41096499)
               

               
               2-236, gnl|dasNov1|scaffold_28087 (5581-5262)
               

               
               2-236, gnl|echTel1|scaffold_308298 (76477-76791)
               

               
               2-236, gnl|hg17|chr14 (63049506-63049825)
               

               
               2-236, gnl|Hg17|chr14 (63049834-63049605)
               

               
               2-236, gnl|mm7|chr12 (73529034-73529336)
               

               
               2-236, gnl|Mm7|chr12 (73529345-73529130)
               

               
               2-236, gnl|panTro1|chr15 (62609984-62610303)
               

               
               2-236, gnl|rheMac2|chr7 (126505778-126506093)
               

               
               2-236, gnl|rn3|chr6 (98174555-98174831)
               


               
               266-497, gnl|bosTau2|chr10 (49323929-49323696)
               

               
               266-497, gnl|canFam2|chr8 (41099497-41099748)
               

               
               266-497, gnl|hg17|chr14 (63051761-63052012)
               

               
               266-497, gnl|Hg17|chr14 (63052670-63051790)
               

               
               266-497, gnl|loxAfr1|scaffold_3326 (16002-15767)
               

               
               266-497, gnl|oryCun1|scaffold_203865 (48455-48256)
               

               
               266-497, gnl|panTro1|chr15 (62612240-62612491)
               

               
               266-497, gnl|rheMac2|chr7 (126508039-126508275)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-236, gnl|bosTau2|chr10 (49321321-49321091)
               

               
               2-236, gnl|canFam2|chr8 (41096182-41096499)
               

               
               2-236, gnl|dasNov1|scaffold_28087 (5581-5262)
               

               
               2-236, gnl|echTel1|scaffold_308298 (76477-76791)
               

               
               2-236, gnl|hg17|chr14 (63049506-63049825)
               

               
               2-236, gnl|Hg17|chr14 (63049834-63049605)
               

               
               2-236, gnl|mm7|chr12 (73529034-73529336)
               

               
               2-236, gnl|Mm7|chr12 (73529345-73529130)
               

               
               2-236, gnl|panTro1|chr15 (62609984-62610303)
               

               
               2-236, gnl|rheMac2|chr7 (126505778-126506093)
               

               
               2-236, gnl|rn3|chr6 (98174555-98174831)
               


               
               266-497, gnl|bosTau2|chr10 (49323929-49323696)
               

               
               266-497, gnl|canFam2|chr8 (41099497-41099748)
               

               
               266-497, gnl|hg17|chr14 (63051761-63052012)
               

               
               266-497, gnl|Hg17|chr14 (63052670-63051790)
               

               
               266-497, gnl|loxAfr1|scaffold_3326 (16002-15767)
               

               
               266-497, gnl|oryCun1|scaffold_203865 (48455-48256)
               

               
               266-497, gnl|panTro1|chr15 (62612240-62612491)
               

               
               266-497, gnl|rheMac2|chr7 (126508039-126508275)

	118-236, + strand, RNAz p=0.629349
	266-366, + strand, RNAz p=0.602828

	2-236, gnl\|bosTau2\|chr10 (49321321-49321091)
	2-236, gnl\|canFam2\|chr8 (41096182-41096499)
	2-236, gnl\|dasNov1\|scaffold_28087 (5581-5262)
	2-236, gnl\|echTel1\|scaffold_308298 (76477-76791)
	2-236, gnl\|hg17\|chr14 (63049506-63049825)
	2-236, gnl\|Hg17\|chr14 (63049834-63049605)
	2-236, gnl\|mm7\|chr12 (73529034-73529336)
	2-236, gnl\|Mm7\|chr12 (73529345-73529130)
	2-236, gnl\|panTro1\|chr15 (62609984-62610303)
	2-236, gnl\|rheMac2\|chr7 (126505778-126506093)
	2-236, gnl\|rn3\|chr6 (98174555-98174831)

	266-497, gnl\|bosTau2\|chr10 (49323929-49323696)
	266-497, gnl\|canFam2\|chr8 (41099497-41099748)
	266-497, gnl\|hg17\|chr14 (63051761-63052012)
	266-497, gnl\|Hg17\|chr14 (63052670-63051790)
	266-497, gnl\|loxAfr1\|scaffold_3326 (16002-15767)
	266-497, gnl\|oryCun1\|scaffold_203865 (48455-48256)
	266-497, gnl\|panTro1\|chr15 (62612240-62612491)
	266-497, gnl\|rheMac2\|chr7 (126508039-126508275)