Non-Coding RNA Search

Pig4-TMW8030A03

Sequence:


               
               GCAATGATGCCTTTGATTCTTTGGAAAGGAAGTGTATGGAAAAAGAAAAGTGTAAAAAAC
CCTCTAGTTTGAAACCCGAAAAGATTCCTTCCAAAAGTTTAAAGTCAGCCCGGCCCATTG
CCCCTGCCATCCCCCCACAGCAAATTTATACCTTCCAGACGGCCACCTTCACAGCAGCAA
GCCCAGGCTCCTCCTCAGGCTTGACCACCACGGTGGTCCAGGCCATGCCCAACAGCCCCC
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATGATGCCTTTGATTCTTTGGAAAGGAAGTGTATGGAAAAAGAAAAGTGTAAAAAAC
CCTCTAGTTTGAAACCCGAAAAGATTCCTTCCAAAAGTTTAAAGTCAGCCCGGCCCATTG
CCCCTGCCATCCCCCCACAGCAAATTTATACCTTCCAGACGGCCACCTTCACAGCAGCAA
GCCCAGGCTCCTCCTCAGGCTTGACCACCACGGTGGTCCAGGCCATGCCCAACAGCCCCC
AAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               124-242, - strand, RNAz p=0.775207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-242, - strand, RNAz p=0.775207

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-242, gnl|bosTau2|chr10 (30582747-30582988)
               

               
               1-242, gnl|canFam2|chr30 (32105399-32105700)
               

               
               1-242, gnl|danRer3|chr8 (11086152-11086423)
               

               
               1-242, gnl|dasNov1|scaffold_3293 (89668-89969)
               

               
               1-242, gnl|echTel1|scaffold_320164 (36438-36739)
               

               
               1-242, gnl|fr1|chrUn (4994995-4995257)
               

               
               1-242, gnl|galGal2|chr10 (1511165-1511466)
               

               
               1-242, gnl|hg17|chr15 (62753944-62754245)
               

               
               1-242, gnl|Hg17|chr15 (62753965-62754206)
               

               
               1-242, gnl|loxAfr1|scaffold_1547 (123731-124062)
               

               
               1-242, gnl|mm7|chr9 (65733488-65733187)
               

               
               1-242, gnl|Mm7|chr9 (65733465-65733224)
               

               
               1-242, gnl|monDom2|scaffold_12 (48759833-48759532)
               

               
               1-242, gnl|oryCun1|scaffold_134205 (5896-5595)
               

               
               1-242, gnl|panTro1|chr16 (63220705-63221006)
               

               
               1-242, gnl|rheMac2|chr7 (43133699-43134000)
               

               
               1-242, gnl|rn3|chr8 (69981451-69981150)
               

               
               1-242, gnl|tetNig1|chr5 (10991322-10991060)
               

               
               1-242, gnl|xenTro1|scaffold_295 (189441-189134)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-242, gnl|bosTau2|chr10 (30582747-30582988)
               

               
               1-242, gnl|canFam2|chr30 (32105399-32105700)
               

               
               1-242, gnl|danRer3|chr8 (11086152-11086423)
               

               
               1-242, gnl|dasNov1|scaffold_3293 (89668-89969)
               

               
               1-242, gnl|echTel1|scaffold_320164 (36438-36739)
               

               
               1-242, gnl|fr1|chrUn (4994995-4995257)
               

               
               1-242, gnl|galGal2|chr10 (1511165-1511466)
               

               
               1-242, gnl|hg17|chr15 (62753944-62754245)
               

               
               1-242, gnl|Hg17|chr15 (62753965-62754206)
               

               
               1-242, gnl|loxAfr1|scaffold_1547 (123731-124062)
               

               
               1-242, gnl|mm7|chr9 (65733488-65733187)
               

               
               1-242, gnl|Mm7|chr9 (65733465-65733224)
               

               
               1-242, gnl|monDom2|scaffold_12 (48759833-48759532)
               

               
               1-242, gnl|oryCun1|scaffold_134205 (5896-5595)
               

               
               1-242, gnl|panTro1|chr16 (63220705-63221006)
               

               
               1-242, gnl|rheMac2|chr7 (43133699-43134000)
               

               
               1-242, gnl|rn3|chr8 (69981451-69981150)
               

               
               1-242, gnl|tetNig1|chr5 (10991322-10991060)
               

               
               1-242, gnl|xenTro1|scaffold_295 (189441-189134)

	1-242, gnl\|bosTau2\|chr10 (30582747-30582988)
	1-242, gnl\|canFam2\|chr30 (32105399-32105700)
	1-242, gnl\|danRer3\|chr8 (11086152-11086423)
	1-242, gnl\|dasNov1\|scaffold_3293 (89668-89969)
	1-242, gnl\|echTel1\|scaffold_320164 (36438-36739)
	1-242, gnl\|fr1\|chrUn (4994995-4995257)
	1-242, gnl\|galGal2\|chr10 (1511165-1511466)
	1-242, gnl\|hg17\|chr15 (62753944-62754245)
	1-242, gnl\|Hg17\|chr15 (62753965-62754206)
	1-242, gnl\|loxAfr1\|scaffold_1547 (123731-124062)
	1-242, gnl\|mm7\|chr9 (65733488-65733187)
	1-242, gnl\|Mm7\|chr9 (65733465-65733224)
	1-242, gnl\|monDom2\|scaffold_12 (48759833-48759532)
	1-242, gnl\|oryCun1\|scaffold_134205 (5896-5595)
	1-242, gnl\|panTro1\|chr16 (63220705-63221006)
	1-242, gnl\|rheMac2\|chr7 (43133699-43134000)
	1-242, gnl\|rn3\|chr8 (69981451-69981150)
	1-242, gnl\|tetNig1\|chr5 (10991322-10991060)
	1-242, gnl\|xenTro1\|scaffold_295 (189441-189134)