Non-Coding RNA Search

Pig4-TMW8031B11

Sequence:


               
               GGTGATGTATCACATCGTTAGGAATAAACCGGAAGTTCCTTTGTATAAGGTCCCTCAAAG
TAGGAAACTAAGGGCCCCTGAATATTTCATTGTGAACCATTTTTGGTGTTACATTTTTTA
AAGATTTCTAATCCTGGGAAGAACTGAAACTCATATAAAAGCTCTTTTCTAGAGCGTGGT
CTTAAAGCACAGCCTCTGTTACCTTTTTGTTTTTAGTTTACTTTGACAAAGTAATTGCAG
AGTAAACAAAAAAAAGTGATACTAGACAAAACTTCCCAAGAAATGGATCACCAAAGCTTT
TTGACATAATCAGTGTAAGTTAGATAGAGTTGGTGAAAGGAGGCTACACATATACTTTCA
CTAAAGTGTCTGTTGGAATGCTTTTGATTTTTGAGTTGTATCTGTAAGTTGCAGGTAGTT
CCCCTAGCCTCCAAGTTCCAGTGGTAATACAGGTTATCCAGTATTGTCCATGTATAGAGC
TACTAGATTATCTTAAAATATTTGCTATTTACAGTTAAATTTGTGAATTACAGGGATTTT
TATGTGAAACAAATAATATCAATTGTGGTTAGGGTAATATTTCTGGGAGAAAATTTTAAA
TTGGACAATAAGTTATTGAGTGTAAGCTATTATTTAACATTGGGTGTTATGCAGTAAAAT
AATGCTTTAAAATGCAACAGTTGTTCTGCTCTTCTGTAGAAATGTATGAAACACCTAAGA
GAATGCTGCAAGTGGATTTATTGTCATCTACCTTCAGTTCTCCTAATGATCCAGATGGAC
TGAATGATATCTTTTGGGATCAGAATTCTCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGATGTATCACATCGTTAGGAATAAACCGGAAGTTCCTTTGTATAAGGTCCCTCAAAG
TAGGAAACTAAGGGCCCCTGAATATTTCATTGTGAACCATTTTTGGTGTTACATTTTTTA
AAGATTTCTAATCCTGGGAAGAACTGAAACTCATATAAAAGCTCTTTTCTAGAGCGTGGT
CTTAAAGCACAGCCTCTGTTACCTTTTTGTTTTTAGTTTACTTTGACAAAGTAATTGCAG
AGTAAACAAAAAAAAGTGATACTAGACAAAACTTCCCAAGAAATGGATCACCAAAGCTTT
TTGACATAATCAGTGTAAGTTAGATAGAGTTGGTGAAAGGAGGCTACACATATACTTTCA
CTAAAGTGTCTGTTGGAATGCTTTTGATTTTTGAGTTGTATCTGTAAGTTGCAGGTAGTT
CCCCTAGCCTCCAAGTTCCAGTGGTAATACAGGTTATCCAGTATTGTCCATGTATAGAGC
TACTAGATTATCTTAAAATATTTGCTATTTACAGTTAAATTTGTGAATTACAGGGATTTT
TATGTGAAACAAATAATATCAATTGTGGTTAGGGTAATATTTCTGGGAGAAAATTTTAAA
TTGGACAATAAGTTATTGAGTGTAAGCTATTATTTAACATTGGGTGTTATGCAGTAAAAT
AATGCTTTAAAATGCAACAGTTGTTCTGCTCTTCTGTAGAAATGTATGAAACACCTAAGA
GAATGCTGCAAGTGGATTTATTGTCATCTACCTTCAGTTCTCCTAATGATCCAGATGGAC
TGAATGATATCTTTTGGGATCAGAATTCTCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               695-813, - strand, RNAz p=0.660862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               695-813, - strand, RNAz p=0.660862

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-813, gnl|bosTau2|chr11 (41706316-41707116)
               

               
               32-813, gnl|Hg17|chr2 (67536945-67538065)
               

               
               32-813, gnl|Mm7|chr11 (17905274-17904602)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-813, gnl|bosTau2|chr11 (41706316-41707116)
               

               
               32-813, gnl|Hg17|chr2 (67536945-67538065)
               

               
               32-813, gnl|Mm7|chr11 (17905274-17904602)

	32-813, gnl\|bosTau2\|chr11 (41706316-41707116)
	32-813, gnl\|Hg17\|chr2 (67536945-67538065)
	32-813, gnl\|Mm7\|chr11 (17905274-17904602)