Non-Coding RNA Search

Pig4-TMW8035C13

Sequence:


               
               ATTGGCATTTGGGCAGGTCTTCATTGAGCAGCGTTCCTGCGCATCGGAGGATGCTCATCG
GCTCTGGCTTCTGCCCACAAAAGGCAATAGCACCATGGTAAACATGGTGAGAATTGAAAA
TATCTCTGTGAGCTTTCTGATTGGAACTACTGCTTGTTTATCTGGTTGATCTCCATAAGC
CAGGAAGCAAAAGGAGGAAAGTGTCCTTATGAAAGTTCCTTGATATTTATTTAAAGAGCT
GAGAATCAAATGGAATGCAATTAACTTGGTAAGATGTGGGAAAGGTGCCCAATTCTCTTG
CCTGCCTCAACCATACTGGCTGGAAAAACTAAATCTTCACTTTTCCAGATGTTTTTGGAC
CTAGTATTGGTCATAGACAGAGTCTGGCCAAGGAATCATTTGTGGAAGTGTGGTGAGTAT
CCTCGGAAGGCTTAGGCTTTTGCCGGTACAACGGAAGGATGGAAGGGACACATCCTTTCC
CTTGTCTTCGTACCTTGCACATAAATGTGATGGTAGGAGCTACAGCAATGATAATGCAAC
CATGAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGCATTTGGGCAGGTCTTCATTGAGCAGCGTTCCTGCGCATCGGAGGATGCTCATCG
GCTCTGGCTTCTGCCCACAAAAGGCAATAGCACCATGGTAAACATGGTGAGAATTGAAAA
TATCTCTGTGAGCTTTCTGATTGGAACTACTGCTTGTTTATCTGGTTGATCTCCATAAGC
CAGGAAGCAAAAGGAGGAAAGTGTCCTTATGAAAGTTCCTTGATATTTATTTAAAGAGCT
GAGAATCAAATGGAATGCAATTAACTTGGTAAGATGTGGGAAAGGTGCCCAATTCTCTTG
CCTGCCTCAACCATACTGGCTGGAAAAACTAAATCTTCACTTTTCCAGATGTTTTTGGAC
CTAGTATTGGTCATAGACAGAGTCTGGCCAAGGAATCATTTGTGGAAGTGTGGTGAGTAT
CCTCGGAAGGCTTAGGCTTTTGCCGGTACAACGGAAGGATGGAAGGGACACATCCTTTCC
CTTGTCTTCGTACCTTGCACATAAATGTGATGGTAGGAGCTACAGCAATGATAATGCAAC
CATGAGGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               37-156, - strand, RNAz p=0.56867
               

               
               387-550, + strand, RNAz p=0.964849

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-156, - strand, RNAz p=0.56867
               

               
               387-550, + strand, RNAz p=0.964849

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-550, gnl|bosTau2|chr3 (55955788-55955238)
               

               
               4-550, gnl|Hg17|chr1 (63103123-63103641)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-550, gnl|bosTau2|chr3 (55955788-55955238)
               

               
               4-550, gnl|Hg17|chr1 (63103123-63103641)

	37-156, - strand, RNAz p=0.56867
	387-550, + strand, RNAz p=0.964849

	4-550, gnl\|bosTau2\|chr3 (55955788-55955238)
	4-550, gnl\|Hg17\|chr1 (63103123-63103641)