Non-Coding RNA Search

Pig4-TMW8035G07

Sequence:


               
               ATTGATCAACTGTACAAAGATGAGGTTGGTGAACTAACTGATATCATCCAGCATAAAGAT
TTGGAGATTCAAGCTCTTCATGCTCGAATTTCTTCAGCTTCCTATGCACATGATGTCGTT
TACCTAGCTGCAGCGGCTGCAGGCCTATGCTATGGAACGGGAACAAGTGCTATCTGTCTT
GAGTGAGAAGACGAGGGAAAATAACCAGCTGAAAACAGAATATCACAAGATGATGGATAT
AGTTGCTGCCAAAGAAGCAGCTCTAAATAAGTTGCAAGACCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGATCAACTGTACAAAGATGAGGTTGGTGAACTAACTGATATCATCCAGCATAAAGAT
TTGGAGATTCAAGCTCTTCATGCTCGAATTTCTTCAGCTTCCTATGCACATGATGTCGTT
TACCTAGCTGCAGCGGCTGCAGGCCTATGCTATGGAACGGGAACAAGTGCTATCTGTCTT
GAGTGAGAAGACGAGGGAAAATAACCAGCTGAAAACAGAATATCACAAGATGATGGATAT
AGTTGCTGCCAAAGAAGCAGCTCTAAATAAGTTGCAAGACCAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-285, - strand, RNAz p=0.998973
               

               
               41-285, - strand, RNAz p=0.766115

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-285, - strand, RNAz p=0.998973
               

               
               41-285, - strand, RNAz p=0.766115

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               1-264, BP342976 Sugano cDNA library, stomach mucosa Homo sapiens cDNA 
(dbj|BP342976.1|), blast E-value=9.99995e-41, identity=83.71% 
               

               
               1-264, BP345575 Sugano cDNA library, synovial membrane Homo sapiens cDNA 
(dbj|BP345575.1|), blast E-value=5.00264e-43, identity=84.09% 
               

               
               1-264, DKFZp779I0934_r1 779 (synonym (emb|BX497573.1|), blast 
E-value=5.00264e-43, identity=84.09% 
               

               
               1-264, HPS13_58 Human testis cDNA library Homo sapiens cDNA, mRNA sequence 
(gb|BM422977.1|), blast E-value=6e-24, identity=81.06% 
               

               
               1-264, UI-HF-BN0-aoc-f-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone 
(gb|CF138673.1|), blast E-value=5.00264e-43, identity=84.09% 
               

               
               1-279, LIB30320_050_E05_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN264962.1|), blast E-value=0, identity=86.02%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-264, BP342976 Sugano cDNA library, stomach mucosa Homo sapiens cDNA 
(dbj|BP342976.1|), blast E-value=9.99995e-41, identity=83.71% 
               

               
               1-264, BP345575 Sugano cDNA library, synovial membrane Homo sapiens cDNA 
(dbj|BP345575.1|), blast E-value=5.00264e-43, identity=84.09% 
               

               
               1-264, DKFZp779I0934_r1 779 (synonym (emb|BX497573.1|), blast 
E-value=5.00264e-43, identity=84.09% 
               

               
               1-264, HPS13_58 Human testis cDNA library Homo sapiens cDNA, mRNA sequence 
(gb|BM422977.1|), blast E-value=6e-24, identity=81.06% 
               

               
               1-264, UI-HF-BN0-aoc-f-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone 
(gb|CF138673.1|), blast E-value=5.00264e-43, identity=84.09% 
               

               
               1-279, LIB30320_050_E05_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN264962.1|), blast E-value=0, identity=86.02%

Aligned organism(s): 35 entry(ies)

More info

Aligned organism(s): 35 entry(ies)

Help | Less info


               
               1-285, gnl|bosTau2|chr21 (36454883-36454600)
               

               
               1-285, gnl|canFam2|chr6 (24096758-24096238)
               

               
               1-285, gnl|canFam2|chr8 (4279542-4279773)
               

               
               1-285, gnl|danRer3|chr13 (34530632-34530404)
               

               
               1-285, gnl|danRer3|chr13 (34530207-34530733)
               

               
               1-285, gnl|dasNov1|scaffold_2 (9865-9345)
               

               
               1-285, gnl|dasNov1|scaffold_25922 (8309-8078)
               

               
               1-285, gnl|echTel1|scaffold_323665 (97820-98051)
               

               
               1-285, gnl|echTel1|scaffold_323665 (98242-97719)
               

               
               1-285, gnl|fr1|chrUn (302611384-302611615)
               

               
               1-285, gnl|fr1|chrUn (302611813-302611283)
               

               
               1-285, gnl|galGal2|chr5 (41354904-41355135)
               

               
               1-285, gnl|galGal2|chr5 (41355326-41354806)
               

               
               1-285, gnl|hg17|chr14 (91540641-91540872)
               

               
               1-285, gnl|Hg17|chr14 (91540937-91540654)
               

               
               1-285, gnl|hg17|chr16 (25012613-25013124)
               

               
               1-285, gnl|loxAfr1|scaffold_77773 (2706-2938)
               

               
               1-285, gnl|loxAfr1|scaffold_77773 (3141-2613)
               

               
               1-285, gnl|mm7|chr12 (99379733-99379964)
               

               
               1-285, gnl|mm7|chr12 (99380155-99379635)
               

               
               1-285, gnl|Mm7|chr12 (99380029-99379746)
               

               
               1-285, gnl|monDom2|scaffold_8 (29854826-29855057)
               

               
               1-285, gnl|monDom2|scaffold_8 (29855248-29854728)
               

               
               1-285, gnl|oryCun1|scaffold_213276 (65009-64786)
               

               
               1-285, gnl|oryCun1|scaffold_213276 (64625-65107)
               

               
               1-285, gnl|panTro1|chr15 (91919227-91919458)
               

               
               1-285, gnl|panTro1|chr18 (25666154-25666665)
               

               
               1-285, gnl|rheMac2|chr20 (23570229-23570740)
               

               
               1-285, gnl|rheMac2|chr7 (155215069-155215300)
               

               
               1-285, gnl|rn3|chr6 (126166276-126166507)
               

               
               1-285, gnl|rn3|chr6 (126166698-126166178)
               

               
               1-285, gnl|tetNig1|chr10 (11522052-11521821)
               

               
               1-285, gnl|tetNig1|chr10 (11521623-11522153)
               

               
               1-285, gnl|xenTro1|scaffold_22 (2781517-2781748)
               

               
               1-285, gnl|xenTro1|scaffold_22 (2781939-2781419)

Aligned organism(s): 35 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-285, gnl|bosTau2|chr21 (36454883-36454600)
               

               
               1-285, gnl|canFam2|chr6 (24096758-24096238)
               

               
               1-285, gnl|canFam2|chr8 (4279542-4279773)
               

               
               1-285, gnl|danRer3|chr13 (34530632-34530404)
               

               
               1-285, gnl|danRer3|chr13 (34530207-34530733)
               

               
               1-285, gnl|dasNov1|scaffold_2 (9865-9345)
               

               
               1-285, gnl|dasNov1|scaffold_25922 (8309-8078)
               

               
               1-285, gnl|echTel1|scaffold_323665 (97820-98051)
               

               
               1-285, gnl|echTel1|scaffold_323665 (98242-97719)
               

               
               1-285, gnl|fr1|chrUn (302611384-302611615)
               

               
               1-285, gnl|fr1|chrUn (302611813-302611283)
               

               
               1-285, gnl|galGal2|chr5 (41354904-41355135)
               

               
               1-285, gnl|galGal2|chr5 (41355326-41354806)
               

               
               1-285, gnl|hg17|chr14 (91540641-91540872)
               

               
               1-285, gnl|Hg17|chr14 (91540937-91540654)
               

               
               1-285, gnl|hg17|chr16 (25012613-25013124)
               

               
               1-285, gnl|loxAfr1|scaffold_77773 (2706-2938)
               

               
               1-285, gnl|loxAfr1|scaffold_77773 (3141-2613)
               

               
               1-285, gnl|mm7|chr12 (99379733-99379964)
               

               
               1-285, gnl|mm7|chr12 (99380155-99379635)
               

               
               1-285, gnl|Mm7|chr12 (99380029-99379746)
               

               
               1-285, gnl|monDom2|scaffold_8 (29854826-29855057)
               

               
               1-285, gnl|monDom2|scaffold_8 (29855248-29854728)
               

               
               1-285, gnl|oryCun1|scaffold_213276 (65009-64786)
               

               
               1-285, gnl|oryCun1|scaffold_213276 (64625-65107)
               

               
               1-285, gnl|panTro1|chr15 (91919227-91919458)
               

               
               1-285, gnl|panTro1|chr18 (25666154-25666665)
               

               
               1-285, gnl|rheMac2|chr20 (23570229-23570740)
               

               
               1-285, gnl|rheMac2|chr7 (155215069-155215300)
               

               
               1-285, gnl|rn3|chr6 (126166276-126166507)
               

               
               1-285, gnl|rn3|chr6 (126166698-126166178)
               

               
               1-285, gnl|tetNig1|chr10 (11522052-11521821)
               

               
               1-285, gnl|tetNig1|chr10 (11521623-11522153)
               

               
               1-285, gnl|xenTro1|scaffold_22 (2781517-2781748)
               

               
               1-285, gnl|xenTro1|scaffold_22 (2781939-2781419)

	1-285, - strand, RNAz p=0.998973
	41-285, - strand, RNAz p=0.766115

	1-264, BP342976 Sugano cDNA library, stomach mucosa Homo sapiens cDNA (dbj\|BP342976.1\|), blast E-value=9.99995e-41, identity=83.71%
	1-264, BP345575 Sugano cDNA library, synovial membrane Homo sapiens cDNA (dbj\|BP345575.1\|), blast E-value=5.00264e-43, identity=84.09%
	1-264, DKFZp779I0934_r1 779 (synonym (emb\|BX497573.1\|), blast E-value=5.00264e-43, identity=84.09%
	1-264, HPS13_58 Human testis cDNA library Homo sapiens cDNA, mRNA sequence (gb\|BM422977.1\|), blast E-value=6e-24, identity=81.06%
	1-264, UI-HF-BN0-aoc-f-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone (gb\|CF138673.1\|), blast E-value=5.00264e-43, identity=84.09%
	1-279, LIB30320_050_E05_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN264962.1\|), blast E-value=0, identity=86.02%

	1-285, gnl\|bosTau2\|chr21 (36454883-36454600)
	1-285, gnl\|canFam2\|chr6 (24096758-24096238)
	1-285, gnl\|canFam2\|chr8 (4279542-4279773)
	1-285, gnl\|danRer3\|chr13 (34530632-34530404)
	1-285, gnl\|danRer3\|chr13 (34530207-34530733)
	1-285, gnl\|dasNov1\|scaffold_2 (9865-9345)
	1-285, gnl\|dasNov1\|scaffold_25922 (8309-8078)
	1-285, gnl\|echTel1\|scaffold_323665 (97820-98051)
	1-285, gnl\|echTel1\|scaffold_323665 (98242-97719)
	1-285, gnl\|fr1\|chrUn (302611384-302611615)
	1-285, gnl\|fr1\|chrUn (302611813-302611283)
	1-285, gnl\|galGal2\|chr5 (41354904-41355135)
	1-285, gnl\|galGal2\|chr5 (41355326-41354806)
	1-285, gnl\|hg17\|chr14 (91540641-91540872)
	1-285, gnl\|Hg17\|chr14 (91540937-91540654)
	1-285, gnl\|hg17\|chr16 (25012613-25013124)
	1-285, gnl\|loxAfr1\|scaffold_77773 (2706-2938)
	1-285, gnl\|loxAfr1\|scaffold_77773 (3141-2613)
	1-285, gnl\|mm7\|chr12 (99379733-99379964)
	1-285, gnl\|mm7\|chr12 (99380155-99379635)
	1-285, gnl\|Mm7\|chr12 (99380029-99379746)
	1-285, gnl\|monDom2\|scaffold_8 (29854826-29855057)
	1-285, gnl\|monDom2\|scaffold_8 (29855248-29854728)
	1-285, gnl\|oryCun1\|scaffold_213276 (65009-64786)
	1-285, gnl\|oryCun1\|scaffold_213276 (64625-65107)
	1-285, gnl\|panTro1\|chr15 (91919227-91919458)
	1-285, gnl\|panTro1\|chr18 (25666154-25666665)
	1-285, gnl\|rheMac2\|chr20 (23570229-23570740)
	1-285, gnl\|rheMac2\|chr7 (155215069-155215300)
	1-285, gnl\|rn3\|chr6 (126166276-126166507)
	1-285, gnl\|rn3\|chr6 (126166698-126166178)
	1-285, gnl\|tetNig1\|chr10 (11522052-11521821)
	1-285, gnl\|tetNig1\|chr10 (11521623-11522153)
	1-285, gnl\|xenTro1\|scaffold_22 (2781517-2781748)
	1-285, gnl\|xenTro1\|scaffold_22 (2781939-2781419)