Non-Coding RNA Search

Pig4-TMW8035K21

Sequence:


               
               AGGAATATTTCTTTTATAAAAATGAGCAGAAATGTGGAGAAAACCTTACATTCATCTTCA
CTGTCAGAATAGCACAAAACTGTCTATTTGTTTCGTTTAGAAAACTTTTTCAAGTATTTG
GTGTTTCTTGCCTTGCTATAGCCTAACACCCCATGCAATGCCAAGTGTCCATGTTCTTTT
TTAGTTTGTTGCAGGGTATTTTTATTTCTATTTTTCTGCAGTATATTTGTAGATGAAAAA
AGTTTTATTAGTAAAACATTTCAAATGGTTATCAATTTAAAAGAAGCTTTATTTTCTGGA
ATGATGATTCAGACATGATCTGATGAATATTGTTTGCTGTTGTGATCTCATTAGGCTAAT
TAGCTTTTTGGTGAACTGTAATAAGCACTGGTATAAAGAAACATTTGAAGATATTAGAGA
ATGAAAACAAAATTGGAAACATGCATTACTTGGGGATTTGTATTATAGTCTGCACACTTG
CCCTTTTTTTTAGGAGTGTTTTGTGAGAAAGAGGGGCGGATGCAACCTGGAAGTAAGTAA
AAGTCATTGTAGGTGGGTAGCAACAAGGCAGATGGTATCCAAGCATCAGTTAACTTTTCT
CTTTATACATCAACAATGCATGGCCTCGCACCAAATAAGGAAATGAACCAGGGGCTATGT
TTTTACCTCCACAGTTGCCTCCTTCCATCAGAGCACCATGTTGGACTTAATGTCTAGTCA
CACATCATTGGCATGTTTTCTCCCCAGCAGGTAATTAAAAAGCTGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATATTTCTTTTATAAAAATGAGCAGAAATGTGGAGAAAACCTTACATTCATCTTCA
CTGTCAGAATAGCACAAAACTGTCTATTTGTTTCGTTTAGAAAACTTTTTCAAGTATTTG
GTGTTTCTTGCCTTGCTATAGCCTAACACCCCATGCAATGCCAAGTGTCCATGTTCTTTT
TTAGTTTGTTGCAGGGTATTTTTATTTCTATTTTTCTGCAGTATATTTGTAGATGAAAAA
AGTTTTATTAGTAAAACATTTCAAATGGTTATCAATTTAAAAGAAGCTTTATTTTCTGGA
ATGATGATTCAGACATGATCTGATGAATATTGTTTGCTGTTGTGATCTCATTAGGCTAAT
TAGCTTTTTGGTGAACTGTAATAAGCACTGGTATAAAGAAACATTTGAAGATATTAGAGA
ATGAAAACAAAATTGGAAACATGCATTACTTGGGGATTTGTATTATAGTCTGCACACTTG
CCCTTTTTTTTAGGAGTGTTTTGTGAGAAAGAGGGGCGGATGCAACCTGGAAGTAAGTAA
AAGTCATTGTAGGTGGGTAGCAACAAGGCAGATGGTATCCAAGCATCAGTTAACTTTTCT
CTTTATACATCAACAATGCATGGCCTCGCACCAAATAAGGAAATGAACCAGGGGCTATGT
TTTTACCTCCACAGTTGCCTCCTTCCATCAGAGCACCATGTTGGACTTAATGTCTAGTCA
CACATCATTGGCATGTTTTCTCCCCAGCAGGTAATTAAAAAGCTGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               405-599, - strand, RNAz p=0.899165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-599, - strand, RNAz p=0.899165

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-766, gnl|bosTau2|chr1 (1316727-1317439)
               

               
               50-766, gnl|Hg17|chr21 (33865469-33866191)
               

               
               50-766, gnl|Mm7|chr16 (91723908-91724599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-766, gnl|bosTau2|chr1 (1316727-1317439)
               

               
               50-766, gnl|Hg17|chr21 (33865469-33866191)
               

               
               50-766, gnl|Mm7|chr16 (91723908-91724599)

	50-766, gnl\|bosTau2\|chr1 (1316727-1317439)
	50-766, gnl\|Hg17\|chr21 (33865469-33866191)
	50-766, gnl\|Mm7\|chr16 (91723908-91724599)