Non-Coding RNA Search

Pig4-TMW8037B07

Sequence:


               
               GTAATTTTCTGTACTAGCTTAACCCCTTTCTGTTCTCTTTGGCTTGTGTTATTAAAATTT
AACTCATGTTCTATTTGTCTAGTTTTACATCCTGGAAGAGCAGGTGATTAAAAAGTCCCT
TTTCTTTCCTCCTTGTGTTCTAAAATTTGCTTATTGCTTCTGAAATTATTTAATTTTGCC
CAATAAAGCATATGGTATGCTGTCCTAATTAGGAATGCAGATACTGCAAATGTTTTACCC
AGAGTAATCAGCTGTTGGTTTCATTTACCTAGACTTTTATTTTCAATTACCGTAAGAGTA
TAACAGTATATTCTACACTCACGCTATAACCATTGATTAAGGGGGAATATTCTGAAGGCC
TTGCTTTCAGGATCCCCAAGTTATTCTAAATCACCCACCTTCTTTTCCTTTCTTTTGTTA
CCCCAGAGATTGAAAGATCTCAAGCAAAGAGAGTTCGCTCGAAATGTCTCTTCAAGATCT
CGCAAGGATGAGAAGAAACAGGAGAAAGCCTTACGGCGGCTCCATGAGTTGGCAGAACAA
AGAAAACAAGCTGAATGTGCACCTGGAAGTGGTCCCATGTTCAGACCAACCACAGTGGCT
GTAGATGAAGAAGGTGGAGATGATGATAAAGATGAATCAGCAACAAACAGTGGCACAAGT
GCCACTGCCACTTGTGGCCTGNGATCTGAATTCTCCACAGATAGAGGAGGCCCTTTCACT
GCAGTACAAATCACTAATACTCCTGGACTGTCGCAGGCTCCCGGGTTAGCCTCTCAGGGT
GTCAGTTTTGGCATTAAGAATAATCTGGGGACCCCATTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAATTTTCTGTACTAGCTTAACCCCTTTCTGTTCTCTTTGGCTTGTGTTATTAAAATTT
AACTCATGTTCTATTTGTCTAGTTTTACATCCTGGAAGAGCAGGTGATTAAAAAGTCCCT
TTTCTTTCCTCCTTGTGTTCTAAAATTTGCTTATTGCTTCTGAAATTATTTAATTTTGCC
CAATAAAGCATATGGTATGCTGTCCTAATTAGGAATGCAGATACTGCAAATGTTTTACCC
AGAGTAATCAGCTGTTGGTTTCATTTACCTAGACTTTTATTTTCAATTACCGTAAGAGTA
TAACAGTATATTCTACACTCACGCTATAACCATTGATTAAGGGGGAATATTCTGAAGGCC
TTGCTTTCAGGATCCCCAAGTTATTCTAAATCACCCACCTTCTTTTCCTTTCTTTTGTTA
CCCCAGAGATTGAAAGATCTCAAGCAAAGAGAGTTCGCTCGAAATGTCTCTTCAAGATCT
CGCAAGGATGAGAAGAAACAGGAGAAAGCCTTACGGCGGCTCCATGAGTTGGCAGAACAA
AGAAAACAAGCTGAATGTGCACCTGGAAGTGGTCCCATGTTCAGACCAACCACAGTGGCT
GTAGATGAAGAAGGTGGAGATGATGATAAAGATGAATCAGCAACAAACAGTGGCACAAGT
GCCACTGCCACTTGTGGCCTGNGATCTGAATTCTCCACAGATAGAGGAGGCCCTTTCACT
GCAGTACAAATCACTAATACTCCTGGACTGTCGCAGGCTCCCGGGTTAGCCTCTCAGGGT
GTCAGTTTTGGCATTAAGAATAATCTGGGGACCCCATTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               392-557, - strand, RNAz p=0.9964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-557, - strand, RNAz p=0.9964

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-269, gnl|bosTau2|chr19 (37865016-37865286)
               

               
               1-269, gnl|Hg17|chr17 (39839351-39839082)
               

               
               1-269, gnl|Mm7|chr11 (102597064-102596801)
               


               
               275-557, gnl|bosTau2|chr19 (37865270-37865553)
               

               
               275-557, gnl|Hg17|chr17 (39839098-39838815)
               

               
               275-557, gnl|Mm7|chr11 (102596817-102596539)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-269, gnl|bosTau2|chr19 (37865016-37865286)
               

               
               1-269, gnl|Hg17|chr17 (39839351-39839082)
               

               
               1-269, gnl|Mm7|chr11 (102597064-102596801)
               


               
               275-557, gnl|bosTau2|chr19 (37865270-37865553)
               

               
               275-557, gnl|Hg17|chr17 (39839098-39838815)
               

               
               275-557, gnl|Mm7|chr11 (102596817-102596539)

	1-269, gnl\|bosTau2\|chr19 (37865016-37865286)
	1-269, gnl\|Hg17\|chr17 (39839351-39839082)
	1-269, gnl\|Mm7\|chr11 (102597064-102596801)

	275-557, gnl\|bosTau2\|chr19 (37865270-37865553)
	275-557, gnl\|Hg17\|chr17 (39839098-39838815)
	275-557, gnl\|Mm7\|chr11 (102596817-102596539)