Non-Coding RNA Search

Pig4-TMW8042H07

Sequence:


               
               GATTGTTAATCCAGTGGGACTGAAATAGACATACATTTGAATAAGATGGCTAAATAATGA
AAATAACTTGTTTACCTGTGTATCGATTTAACGAAGGAAAGTATATTCGTGATTTGTTTA
TGTCTTTTTTAACACAACGAAAACTGGATTGAGAAGCTTGCCAGACATACATATTCATTT
TTCCAAGAATAACTTTTTGATAGCTTTAGTGAGGAAAATGATTCATTTGAATCAATACAT
TGTGTGTAATTTAAAAGCCAAGGATACATTTACTCTTCTGGGTTTTTATTCACTTTAAAC
TTATCCAAATTTTATGAAAAGCTCTTTACCTCAAGCACTGGCTGCATCAGATTTTGTTTT
TGGTGGGAGGGGAATCTTAACTTGTGTCCCATGTGCAGTTATATGTTCCCTGGGTAGAGC
AAAATGGTGGCTGCTCTTGGATTTCTCTTCCAGTGCCAGAATCCTCTCCCTTCAATACTG
CATGTGGAACATTCCTAATCCGTGTTTGTTTCCCTCAGGACTAGGGCTCCTTGGGGATTT
GGCTGCCTAGCTTGATGGAAGTATTCCAGCTCTGCTTTCTTTCGGATAGTATTTCTCCTC
CATTTTATCTAAATAGAGGATTATATTAGCTAAACATGATTAAATTTGAGATATGAGTAG
GTACATTTCTGGTTTCTAGTTCTGTTAAAGTTTCTTATGGTCCCTGTCTCTGCATGCAAC
ATAGTGTTTTAACGTAACCATCTTTTAGTAGCTCCAACTCTTAGGAAAAAGTTTGGAAGA
ACCCTAAGCAAGTTGTTGAAAGAAACGGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGTTAATCCAGTGGGACTGAAATAGACATACATTTGAATAAGATGGCTAAATAATGA
AAATAACTTGTTTACCTGTGTATCGATTTAACGAAGGAAAGTATATTCGTGATTTGTTTA
TGTCTTTTTTAACACAACGAAAACTGGATTGAGAAGCTTGCCAGACATACATATTCATTT
TTCCAAGAATAACTTTTTGATAGCTTTAGTGAGGAAAATGATTCATTTGAATCAATACAT
TGTGTGTAATTTAAAAGCCAAGGATACATTTACTCTTCTGGGTTTTTATTCACTTTAAAC
TTATCCAAATTTTATGAAAAGCTCTTTACCTCAAGCACTGGCTGCATCAGATTTTGTTTT
TGGTGGGAGGGGAATCTTAACTTGTGTCCCATGTGCAGTTATATGTTCCCTGGGTAGAGC
AAAATGGTGGCTGCTCTTGGATTTCTCTTCCAGTGCCAGAATCCTCTCCCTTCAATACTG
CATGTGGAACATTCCTAATCCGTGTTTGTTTCCCTCAGGACTAGGGCTCCTTGGGGATTT
GGCTGCCTAGCTTGATGGAAGTATTCCAGCTCTGCTTTCTTTCGGATAGTATTTCTCCTC
CATTTTATCTAAATAGAGGATTATATTAGCTAAACATGATTAAATTTGAGATATGAGTAG
GTACATTTCTGGTTTCTAGTTCTGTTAAAGTTTCTTATGGTCCCTGTCTCTGCATGCAAC
ATAGTGTTTTAACGTAACCATCTTTTAGTAGCTCCAACTCTTAGGAAAAAGTTTGGAAGA
ACCCTAAGCAAGTTGTTGAAAGAAACGGGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               375-489, + strand, RNAz p=0.563788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-489, + strand, RNAz p=0.563788

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               121-363, gnl|bosTau2|chr1 (11948122-11948363)
               

               
               121-363, gnl|Hg17|chr21 (16872986-16873228)
               


               
               375-804, gnl|bosTau2|chr1 (11948581-11949011)
               

               
               375-804, gnl|Hg17|chr21 (16873232-16873662)
               

               
               375-804, gnl|Mm7|chr16 (77633249-77633668)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-363, gnl|bosTau2|chr1 (11948122-11948363)
               

               
               121-363, gnl|Hg17|chr21 (16872986-16873228)
               


               
               375-804, gnl|bosTau2|chr1 (11948581-11949011)
               

               
               375-804, gnl|Hg17|chr21 (16873232-16873662)
               

               
               375-804, gnl|Mm7|chr16 (77633249-77633668)

	121-363, gnl\|bosTau2\|chr1 (11948122-11948363)
	121-363, gnl\|Hg17\|chr21 (16872986-16873228)

	375-804, gnl\|bosTau2\|chr1 (11948581-11949011)
	375-804, gnl\|Hg17\|chr21 (16873232-16873662)
	375-804, gnl\|Mm7\|chr16 (77633249-77633668)