Non-Coding RNA Search

Pig4-TMW8042P24

Sequence:


               
               AAAGAAAGAGGAAGAAGTGCTGTGATACCAAGGAGAGAGGCTGATGATGGAGCCACTGTG
GTGGTACCCATGCAGAGTGACTTGGCCTGTTTTGGCCCACACAACTCTTGGATGTTCCTA
AAACCCTCAGGGAGTGGTGGTGTAAAAACTGATGTAACCTGAGGGCTGAAACGCTTAGAA
TTAATTATGTATAGAAACCGAAAGATACATCTGACTGTGTTGATTTTGATTTCTGACTGT
TCTTAACTGCAGATTCAGAATCCAACACAGCTTTGATGTAGAACAAGTCCGCTCCAAGTC
CCAGCTATGAGAACTCTGTTGTTGGTTCTGTTCTCTAGACTGACTGACTGTATCTCCTTC
CTTTCCCGCCCTTCTATTTCCTGCCTTTGGCTGCTTGTGGTTGGAAGGAGATGAACTAGG
GAAAAGGAGCCATAACACATAGCTGTGGTGAGGTTTGGGCTTATCTGGGACCTAACGTGT
GTTCTGTTCTCCTCCCTTTCCTTCTGGATCAGTGAAGCTTGAGTGCCCCGTATATCTAAC
TCTGCTGCAGCAGTGCACAAAAACAAGTATTTCTCTCTGGAGTAATTATAGAGTCATTAA
AATAGAAAAAATTTATAGGTAAATTTTTCCTTGTATTTCTGTATTTGTTGGGATTGCCAA
GCAAGAAACAAAACAGGAAAAAAAAAAAAAAAATGGTGGACCCAGTTCACAGCATGAAGC
ATTTGAACAAGAAATAAATTGAACCAGTTTGCTACCTTTCTGGCAGATGAGCTGATCTTT
CCAAGGGATTTGGCTTAGTGGTTTTATTTGTTCTTCTAATCCCTGCCCCCCCTTCCAAAA
AAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAAGAGGAAGAAGTGCTGTGATACCAAGGAGAGAGGCTGATGATGGAGCCACTGTG
GTGGTACCCATGCAGAGTGACTTGGCCTGTTTTGGCCCACACAACTCTTGGATGTTCCTA
AAACCCTCAGGGAGTGGTGGTGTAAAAACTGATGTAACCTGAGGGCTGAAACGCTTAGAA
TTAATTATGTATAGAAACCGAAAGATACATCTGACTGTGTTGATTTTGATTTCTGACTGT
TCTTAACTGCAGATTCAGAATCCAACACAGCTTTGATGTAGAACAAGTCCGCTCCAAGTC
CCAGCTATGAGAACTCTGTTGTTGGTTCTGTTCTCTAGACTGACTGACTGTATCTCCTTC
CTTTCCCGCCCTTCTATTTCCTGCCTTTGGCTGCTTGTGGTTGGAAGGAGATGAACTAGG
GAAAAGGAGCCATAACACATAGCTGTGGTGAGGTTTGGGCTTATCTGGGACCTAACGTGT
GTTCTGTTCTCCTCCCTTTCCTTCTGGATCAGTGAAGCTTGAGTGCCCCGTATATCTAAC
TCTGCTGCAGCAGTGCACAAAAACAAGTATTTCTCTCTGGAGTAATTATAGAGTCATTAA
AATAGAAAAAATTTATAGGTAAATTTTTCCTTGTATTTCTGTATTTGTTGGGATTGCCAA
GCAAGAAACAAAACAGGAAAAAAAAAAAAAAAATGGTGGACCCAGTTCACAGCATGAAGC
ATTTGAACAAGAAATAAATTGAACCAGTTTGCTACCTTTCTGGCAGATGAGCTGATCTTT
CCAAGGGATTTGGCTTAGTGGTTTTATTTGTTCTTCTAATCCCTGCCCCCCCTTCCAAAA
AAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               114-203, - strand, RNAz p=0.813905
               

               
               386-502, + strand, RNAz p=0.790453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-203, - strand, RNAz p=0.813905
               

               
               386-502, + strand, RNAz p=0.790453

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               391-531, - strand, RNAmicro p=0.922108

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               391-531, - strand, RNAmicro p=0.922108

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               36-610, gnl|bosTau2|chr19 (17098447-17097836)
               

               
               36-610, gnl|Hg17|chr17 (1297625-1297028)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-610, gnl|bosTau2|chr19 (17098447-17097836)
               

               
               36-610, gnl|Hg17|chr17 (1297625-1297028)

	114-203, - strand, RNAz p=0.813905
	386-502, + strand, RNAz p=0.790453

	36-610, gnl\|bosTau2\|chr19 (17098447-17097836)
	36-610, gnl\|Hg17\|chr17 (1297625-1297028)