Non-Coding RNA Search

Pig4-TMW8043K01

Sequence:


               
               CAGAGGGAGTTCATTGTTGTCTCAGATAAAGGATAGAGGAGAAACCTGGGATCCTGAGAA
AACAGGGATGGGTGGCAGCACATGGGTGGGGGGTGTATGGGGAGGCGTGGCTTCTGAGAA
CCAGGCTGGTGTGACACACCCACTTGCTGTGTGGTTCTGGGAAATTTCCTTCATCTCTCC
AGACCTGTTTCTTTCAAACGAAGGCTGTTGAATAATCTCTTCCAGGGTCGAGGTGAGCCC
CTAATGTGACAGTAGAGGAATCCGAAAGTGTCAAAACTGAAGGGCCCTACGTGGGACCAA
CAGTCCCATTTTACCAAAGGGTGAACTGAAGTCCAAAGACATAAAAAAAGGTCCTCAGAT
CCGAGTTCCAGGCTGACTTGCTGGGTTCCTGGCTCTTTCTTCTACACCATGTCTACAGGG
ACTTCTGCTTAGCAGATATTCAGATACTCACCATGGGAGCCTGGGGAGGGGTCTCACAGC
TGAACTGCACCCCCCTCCCTGCAGGTCAGTGGCCGCTTCTTCCCGTACAGCGCCATCAAC
ACAGATGCCATCCTCAGCCTCGACGCCCACAGCAGTCTTTCCACAAGTGAGGTGAGGAGC
CCCATCTGGGTTGGGGCAGAAGCAAAGCCCTGGTGGCCCCTCAGATTCCGGAAGCTGGGA
CCACCAGAGGTCAAGAGGTCCAGCCTCCTGCTTTTGATACCACCCCAGCAAGCCAATCAC
GCTTCCTCCTCAGAAATCTAATGGGAGCTTTCCACAGACTCTCACTCTTTCTCTTTTTTT
CTTTCTTTCTTTTTTTTAGCCCTGCACCTGCAGCCTGGAAACTTCATATGTCTTGCGTGC
AGCCCTAAAAAGATATCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGGAGTTCATTGTTGTCTCAGATAAAGGATAGAGGAGAAACCTGGGATCCTGAGAA
AACAGGGATGGGTGGCAGCACATGGGTGGGGGGTGTATGGGGAGGCGTGGCTTCTGAGAA
CCAGGCTGGTGTGACACACCCACTTGCTGTGTGGTTCTGGGAAATTTCCTTCATCTCTCC
AGACCTGTTTCTTTCAAACGAAGGCTGTTGAATAATCTCTTCCAGGGTCGAGGTGAGCCC
CTAATGTGACAGTAGAGGAATCCGAAAGTGTCAAAACTGAAGGGCCCTACGTGGGACCAA
CAGTCCCATTTTACCAAAGGGTGAACTGAAGTCCAAAGACATAAAAAAAGGTCCTCAGAT
CCGAGTTCCAGGCTGACTTGCTGGGTTCCTGGCTCTTTCTTCTACACCATGTCTACAGGG
ACTTCTGCTTAGCAGATATTCAGATACTCACCATGGGAGCCTGGGGAGGGGTCTCACAGC
TGAACTGCACCCCCCTCCCTGCAGGTCAGTGGCCGCTTCTTCCCGTACAGCGCCATCAAC
ACAGATGCCATCCTCAGCCTCGACGCCCACAGCAGTCTTTCCACAAGTGAGGTGAGGAGC
CCCATCTGGGTTGGGGCAGAAGCAAAGCCCTGGTGGCCCCTCAGATTCCGGAAGCTGGGA
CCACCAGAGGTCAAGAGGTCCAGCCTCCTGCTTTTGATACCACCCCAGCAAGCCAATCAC
GCTTCCTCCTCAGAAATCTAATGGGAGCTTTCCACAGACTCTCACTCTTTCTCTTTTTTT
CTTTCTTTCTTTTTTTTAGCCCTGCACCTGCAGCCTGGAAACTTCATATGTCTTGCGTGC
AGCCCTAAAAAGATATCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               608-762, - strand, RNAz p=0.999293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               608-762, - strand, RNAz p=0.999293

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               60-762, gnl|bosTau2|chr2 (79796252-79795541)
               

               
               60-762, gnl|Hg17|chr1 (26043379-26044135)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-762, gnl|bosTau2|chr2 (79796252-79795541)
               

               
               60-762, gnl|Hg17|chr1 (26043379-26044135)

	60-762, gnl\|bosTau2\|chr2 (79796252-79795541)
	60-762, gnl\|Hg17\|chr1 (26043379-26044135)