Pig4-TMW8046J16
               |  | AAATGAATTTCCTTAAGATCAGAAAAAGTCAAAGATGTTTAATCTTGCGTGTTTTTTTCA
ACATCTTTTGCAAATACTAGCCATGGCAATCAGAGAAGAAGAAAAGTAATCCAATTAGGA
AAAGAAGAACTGCAACTGTCACTGTTTCAGATGACATGATACTATTCATAGAAAACCCTT
AAAAAGAACAACAACAACAACAACAACAACAAAAATTTAGGGAAGATTTAACAGCTATGC
TTTTGAAACTCTACCAAAAAATTACAGAGGAGGAtcccaaactgattcggtgaggccacc
ttcaccctgataccaaaaccagataaagataccacaaaaa | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | AAATGAATTTCCTTAAGATCAGAAAAAGTCAAAGATGTTTAATCTTGCGTGTTTTTTTCA
ACATCTTTTGCAAATACTAGCCATGGCAATCAGAGAAGAAGAAAAGTAATCCAATTAGGA
AAAGAAGAACTGCAACTGTCACTGTTTCAGATGACATGATACTATTCATAGAAAACCCTT
AAAAAGAACAACAACAACAACAACAACAACAAAAATTTAGGGAAGATTTAACAGCTATGC
TTTTGAAACTCTACCAAAAAATTACAGAGGAGGAtcccaaactgattcggtgaggccacc
ttcaccctgataccaaaaccagataaagataccacaaaaa |