Non-Coding RNA Search

Pig4-TMW8046O24

Sequence:


               
               TAGTCAGCAGTGCTGTGAGGCAGGGAAGCTTGTTCCCCTAGAGGCAGCTCCATCAGACTG
AAGAAACAGTCCCATAAAGCTTTCAGCTAACCNTGCAGGGTGACATTCCTCCTGTGACAG
GCACCCTCCAACGTACCCAGTGTCCTTGTTGGTCATAGTTCTGGGCTTGAGGCCTGCATA
TCTGCATCTCTCTTTATGCATTTAAAACTTTGTGCAGTCACAACTGTGTGAGTTACTGTA
CCCTTTTGGAGCCTCGGTGATGTCACTTTGAGGACCAGATGCAGTATGATGAGTAAAAGC
TGTTTTTACCCCTGGATTAGTTGAAGAACAGTTGTAGAATTCAGCCACCAGGGGCCACTG
AGTTCCTGGCTTAGTTTCCAGAAAGACATTTGTCTGCTCTCTCCACCCACCAGCTCCTAC
GCCCCATCTTCAGTGAGGACTCATTCATTTCCTCTTTGAAATTAATCACCTCGCCAGTCG
CTTCTGATCAGCACAGGATGTTTTGTGTTTTGAGAGCCTGCTCCCAGCTAGATTGAGGTT
CAGCCCTGCTCGGTCTGAGCCCAGAGACAAGTCAGAGAGACAGACACATGGATGTCACAG
ATAGATGGCTATGTGTGCCACACGCAGAGGCCGGAACTCAGGTTTCTGGGGTGTCTGGGC
TGGTTTCTGGGGTGTCTGGGCTGGGTTTCAAAGCGCAAATAGGAGTGAAATACCTGAGTG
GCTTAGTAGGTTAGGGATCCAGCATTGCCACAGCTGTGGTCGCTTGGATTCGATCCCTGG
CCCAGGAACTTCCATATGCTATGGCTAAGGCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTCAGCAGTGCTGTGAGGCAGGGAAGCTTGTTCCCCTAGAGGCAGCTCCATCAGACTG
AAGAAACAGTCCCATAAAGCTTTCAGCTAACCNTGCAGGGTGACATTCCTCCTGTGACAG
GCACCCTCCAACGTACCCAGTGTCCTTGTTGGTCATAGTTCTGGGCTTGAGGCCTGCATA
TCTGCATCTCTCTTTATGCATTTAAAACTTTGTGCAGTCACAACTGTGTGAGTTACTGTA
CCCTTTTGGAGCCTCGGTGATGTCACTTTGAGGACCAGATGCAGTATGATGAGTAAAAGC
TGTTTTTACCCCTGGATTAGTTGAAGAACAGTTGTAGAATTCAGCCACCAGGGGCCACTG
AGTTCCTGGCTTAGTTTCCAGAAAGACATTTGTCTGCTCTCTCCACCCACCAGCTCCTAC
GCCCCATCTTCAGTGAGGACTCATTCATTTCCTCTTTGAAATTAATCACCTCGCCAGTCG
CTTCTGATCAGCACAGGATGTTTTGTGTTTTGAGAGCCTGCTCCCAGCTAGATTGAGGTT
CAGCCCTGCTCGGTCTGAGCCCAGAGACAAGTCAGAGAGACAGACACATGGATGTCACAG
ATAGATGGCTATGTGTGCCACACGCAGAGGCCGGAACTCAGGTTTCTGGGGTGTCTGGGC
TGGTTTCTGGGGTGTCTGGGCTGGGTTTCAAAGCGCAAATAGGAGTGAAATACCTGAGTG
GCTTAGTAGGTTAGGGATCCAGCATTGCCACAGCTGTGGTCGCTTGGATTCGATCCCTGG
CCCAGGAACTTCCATATGCTATGGCTAAGGCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               485-603, - strand, RNAz p=0.790872

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               485-603, - strand, RNAz p=0.790872

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               261-707, gnl|bosTau2|chr13 (43289470-43289921)
               

               
               261-707, gnl|Hg17|chr20 (29608917-29609689)
               

               
               261-707, gnl|Mm7|chr2 (152434236-152434723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               261-707, gnl|bosTau2|chr13 (43289470-43289921)
               

               
               261-707, gnl|Hg17|chr20 (29608917-29609689)
               

               
               261-707, gnl|Mm7|chr2 (152434236-152434723)

	261-707, gnl\|bosTau2\|chr13 (43289470-43289921)
	261-707, gnl\|Hg17\|chr20 (29608917-29609689)
	261-707, gnl\|Mm7\|chr2 (152434236-152434723)