Non-Coding RNA Search

Pig4-TMW8048E23

Sequence:


               
               GGAAATCCAAGCCACACCCCTGCAGTAATTTGTGATGTATACTAAATAGGCTTGTGTGCA
AGGACCTTGTTCTCTTGCTGGTAAGAAGGGCCAGCGTTAGAATGTGTGCACTGTGTGGCT
GCATGGGATGTGGAGTGTTTGTCAGTCTCTACTCTGCTGCCCTGTGAAGACCACGACATG
TTAAGAATGATCTTGCTTCCAAATTTTACCATATTCAGACTAAATTAGCTGGGCCATATG
TAGCATATATATCTGGCTGCCATTGTGGGTATTGGGAACATGAGGGGTGGGTGAATTGTT
GTTGTTTTAGGTTTCAGTCAGACAGCCATCCCTGTGCCCCCAGTTCCCAGAAGCACAGCA
TGCCTCTAGGAGCATCCGTGGGAACGGCGCAGTCCTGACATCACCACCTCTCCTGCTCAG
GCTCATCCCATATACAGAGGTCAAAGGGGTGGGGTTTAAGATCGGGGGAAGGAATGAGAA
AGCAGAAACAATGTCACTGCCATGCCACTGTTGACTAGCATTTGTTGCTTATGTCATTGT
TTAAATTGGCTTTTTTTTTTTTTTTAATCTGGGGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATCCAAGCCACACCCCTGCAGTAATTTGTGATGTATACTAAATAGGCTTGTGTGCA
AGGACCTTGTTCTCTTGCTGGTAAGAAGGGCCAGCGTTAGAATGTGTGCACTGTGTGGCT
GCATGGGATGTGGAGTGTTTGTCAGTCTCTACTCTGCTGCCCTGTGAAGACCACGACATG
TTAAGAATGATCTTGCTTCCAAATTTTACCATATTCAGACTAAATTAGCTGGGCCATATG
TAGCATATATATCTGGCTGCCATTGTGGGTATTGGGAACATGAGGGGTGGGTGAATTGTT
GTTGTTTTAGGTTTCAGTCAGACAGCCATCCCTGTGCCCCCAGTTCCCAGAAGCACAGCA
TGCCTCTAGGAGCATCCGTGGGAACGGCGCAGTCCTGACATCACCACCTCTCCTGCTCAG
GCTCATCCCATATACAGAGGTCAAAGGGGTGGGGTTTAAGATCGGGGGAAGGAATGAGAA
AGCAGAAACAATGTCACTGCCATGCCACTGTTGACTAGCATTTGTTGCTTATGTCATTGT
TTAAATTGGCTTTTTTTTTTTTTTTAATCTGGGGGTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-357, + strand, RNAz p=0.734314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-357, + strand, RNAz p=0.734314

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               299-409, + strand, RNAmicro p=0.999919

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               299-409, + strand, RNAmicro p=0.999919

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-556, gnl|bosTau2|chr5 (59675925-59675358)
               

               
               4-556, gnl|canFam2|chr27 (39956823-39956300)
               

               
               4-556, gnl|dasNov1|scaffold_23815 (4713-4211)
               

               
               4-556, gnl|echTel1|scaffold_228897 (560-1062)
               

               
               4-556, gnl|hg17|chr12 (8822825-8823369)
               

               
               4-556, gnl|Hg17|chr12 (8822896-8823478)
               

               
               4-556, gnl|loxAfr1|scaffold_8500 (20468-19959)
               

               
               4-556, gnl|mm7|chr6 (122488516-122488010)
               

               
               4-556, gnl|monDom2|scaffold_31 (11949964-11949404)
               

               
               4-556, gnl|oryCun1|scaffold_209455 (128320-127808)
               

               
               4-556, gnl|panTro1|chr10 (9365213-9365757)
               

               
               4-556, gnl|rheMac2|chr11 (8924487-8925041)
               

               
               4-556, gnl|rn3|chr4 (159145595-159145088)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-556, gnl|bosTau2|chr5 (59675925-59675358)
               

               
               4-556, gnl|canFam2|chr27 (39956823-39956300)
               

               
               4-556, gnl|dasNov1|scaffold_23815 (4713-4211)
               

               
               4-556, gnl|echTel1|scaffold_228897 (560-1062)
               

               
               4-556, gnl|hg17|chr12 (8822825-8823369)
               

               
               4-556, gnl|Hg17|chr12 (8822896-8823478)
               

               
               4-556, gnl|loxAfr1|scaffold_8500 (20468-19959)
               

               
               4-556, gnl|mm7|chr6 (122488516-122488010)
               

               
               4-556, gnl|monDom2|scaffold_31 (11949964-11949404)
               

               
               4-556, gnl|oryCun1|scaffold_209455 (128320-127808)
               

               
               4-556, gnl|panTro1|chr10 (9365213-9365757)
               

               
               4-556, gnl|rheMac2|chr11 (8924487-8925041)
               

               
               4-556, gnl|rn3|chr4 (159145595-159145088)

	4-556, gnl\|bosTau2\|chr5 (59675925-59675358)
	4-556, gnl\|canFam2\|chr27 (39956823-39956300)
	4-556, gnl\|dasNov1\|scaffold_23815 (4713-4211)
	4-556, gnl\|echTel1\|scaffold_228897 (560-1062)
	4-556, gnl\|hg17\|chr12 (8822825-8823369)
	4-556, gnl\|Hg17\|chr12 (8822896-8823478)
	4-556, gnl\|loxAfr1\|scaffold_8500 (20468-19959)
	4-556, gnl\|mm7\|chr6 (122488516-122488010)
	4-556, gnl\|monDom2\|scaffold_31 (11949964-11949404)
	4-556, gnl\|oryCun1\|scaffold_209455 (128320-127808)
	4-556, gnl\|panTro1\|chr10 (9365213-9365757)
	4-556, gnl\|rheMac2\|chr11 (8924487-8925041)
	4-556, gnl\|rn3\|chr4 (159145595-159145088)