Non-Coding RNA Search

Pig4-TMW8048I02

Sequence:


               
               ATAATAAGATACATATATGAGTACTGTTTTGAAGGATTCTAAGCATTTATATAAAAAATC
TTTTCCAAATCACAACTACTTTCTGGCATAGTCATCTCGAGTTAGTACACATTTTTGATT
TTTTATTACCAAAACTGATTAAAATTAATTTTGTTTGCTCTTTTTTCAGTTCCCAGGCAT
CAACCTAATTGATACTGTGTTTCTGCTTCAGTTGATTAGTTTTTCGGTTTATATGCAATT
TGGGGTTTGAAGGGAAACAATGATAAGCAGATTGAGTGTCAGTAAGTTTATCAACATATG
GCTTTCCTGTCTAAATTGAATGTGGAATGTAAAACTTCATTAAAACTCACCTTTGAAACC
TACCAATAAACAGTTCAGAAAAATGTCTAATGAGATGGCAATAGAAAGTCTCCAAATACA
TTAGCCATTATTGTCTTTATTAACATAAACAAGCCAGTTGACATACTTTTCTTTAAAATG
TTTTTAGTAGGGGTAGAGCTACTACCTGCAAAATCCTGATTGTAAGATGTAGATGGAATT
TTTCTTACTTCTCTGCAAGTCCTTTTGTTTTGTTTTATTTTCTTCCCTCACTCTGTTAAT
TCTTTGTTCCACAACCTTCCCCAGTCTTTGTTTCTGTTTTCAACATTCCATAGTAATAAC
TTTTCTGATGTCTTGGTCTCTCAATTACATTATCCCCTAAATTCCAACGAACTTTTTCAG
CATTTCATATCTGCAACCCACTAATATCGTTCAGTCCTTTATCAAACAAACAAACTGAAA
TAAAACAAAGGAAATACAAACCAAACCCTACCACTTTCAAGACTTGAACCCTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAATAAGATACATATATGAGTACTGTTTTGAAGGATTCTAAGCATTTATATAAAAAATC
TTTTCCAAATCACAACTACTTTCTGGCATAGTCATCTCGAGTTAGTACACATTTTTGATT
TTTTATTACCAAAACTGATTAAAATTAATTTTGTTTGCTCTTTTTTCAGTTCCCAGGCAT
CAACCTAATTGATACTGTGTTTCTGCTTCAGTTGATTAGTTTTTCGGTTTATATGCAATT
TGGGGTTTGAAGGGAAACAATGATAAGCAGATTGAGTGTCAGTAAGTTTATCAACATATG
GCTTTCCTGTCTAAATTGAATGTGGAATGTAAAACTTCATTAAAACTCACCTTTGAAACC
TACCAATAAACAGTTCAGAAAAATGTCTAATGAGATGGCAATAGAAAGTCTCCAAATACA
TTAGCCATTATTGTCTTTATTAACATAAACAAGCCAGTTGACATACTTTTCTTTAAAATG
TTTTTAGTAGGGGTAGAGCTACTACCTGCAAAATCCTGATTGTAAGATGTAGATGGAATT
TTTCTTACTTCTCTGCAAGTCCTTTTGTTTTGTTTTATTTTCTTCCCTCACTCTGTTAAT
TCTTTGTTCCACAACCTTCCCCAGTCTTTGTTTCTGTTTTCAACATTCCATAGTAATAAC
TTTTCTGATGTCTTGGTCTCTCAATTACATTATCCCCTAAATTCCAACGAACTTTTTCAG
CATTTCATATCTGCAACCCACTAATATCGTTCAGTCCTTTATCAAACAAACAAACTGAAA
TAAAACAAAGGAAATACAAACCAAACCCTACCACTTTCAAGACTTGAACCCTGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               164-274, + strand, RNAz p=0.576871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-274, + strand, RNAz p=0.576871

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-648, gnl|bosTau2|chr3 (32544807-32544167)
               

               
               5-648, gnl|Hg17|chr1 (106895469-106894813)
               

               
               5-648, gnl|Mm7|chr3 (110517501-110518523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-648, gnl|bosTau2|chr3 (32544807-32544167)
               

               
               5-648, gnl|Hg17|chr1 (106895469-106894813)
               

               
               5-648, gnl|Mm7|chr3 (110517501-110518523)

	5-648, gnl\|bosTau2\|chr3 (32544807-32544167)
	5-648, gnl\|Hg17\|chr1 (106895469-106894813)
	5-648, gnl\|Mm7\|chr3 (110517501-110518523)