Non-Coding RNA Search

Pig4-TMW8048L11

Sequence:


               
               TTGTTTTGGAAATTTTGACATGATCCCTAAATTCAACATTGGGATTTTAAAAAAAAAAAA
AAAAGTTCTTATTTACCTCCTAGAGAAAGTGTTGCCCTTATGCCACATATAATAGCAAAT
TGCTTTTTTTATGGCATGCATAACCTAGATGGGAAAAAATATGGCGCTTCGGGGAAGGAG
GGAAAAAGTAAATGAAGTTCCAGGAATGTCATTCTGAAGTAATGAGGCATGGACAGAAAA
TATACCCCTCACATCATCGGATTGAGATGGCAGTCGAAATAGCTTCATTGAAGTGTCAGC
ACGCATCCATCAATCAATCACCCACAAGGAAAAATAGCAACAGTACAACCGGGCGGCTTT
TATGGGATTTACTCATGGGCATAGGGAATAGCAGCTCAAATGTAGTTCTGACATGAAAAG
CAAGGTGCTGATATTATTTTTTATGATGGGAGGATCATAAAGTGAATTGAGAACAGCGAG
GTCTGTCTTTGCTTAACCTATTCAACCAGAAATGAATGGCGCTCAACTGGAAAGGAACAG
TCTTCGGATGGGTTAAGATTGAAGGGTGGACCCTTCTGAGCACTGTCCTTCGACAACGAA
ATTCTATTAAAGGAAAATCAATGCATTAGCATTGGGGTTCTTGAAGCTGTTAAAAATTGC
CTGCTCCAACCCAGGGTTATTAGATAAAGTTACATAATTCAGATTCTGTCAAAATCATCC
CAAAGCAGATTTGCGAGCTCTTGCTCCAACTGGGGGGAAACAATGTGACTCTCAACTCCG
TGGAAATTGTTTCCCTTCTGCGAAAGAAAAAATAAATCATCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTTGGAAATTTTGACATGATCCCTAAATTCAACATTGGGATTTTAAAAAAAAAAAA
AAAAGTTCTTATTTACCTCCTAGAGAAAGTGTTGCCCTTATGCCACATATAATAGCAAAT
TGCTTTTTTTATGGCATGCATAACCTAGATGGGAAAAAATATGGCGCTTCGGGGAAGGAG
GGAAAAAGTAAATGAAGTTCCAGGAATGTCATTCTGAAGTAATGAGGCATGGACAGAAAA
TATACCCCTCACATCATCGGATTGAGATGGCAGTCGAAATAGCTTCATTGAAGTGTCAGC
ACGCATCCATCAATCAATCACCCACAAGGAAAAATAGCAACAGTACAACCGGGCGGCTTT
TATGGGATTTACTCATGGGCATAGGGAATAGCAGCTCAAATGTAGTTCTGACATGAAAAG
CAAGGTGCTGATATTATTTTTTATGATGGGAGGATCATAAAGTGAATTGAGAACAGCGAG
GTCTGTCTTTGCTTAACCTATTCAACCAGAAATGAATGGCGCTCAACTGGAAAGGAACAG
TCTTCGGATGGGTTAAGATTGAAGGGTGGACCCTTCTGAGCACTGTCCTTCGACAACGAA
ATTCTATTAAAGGAAAATCAATGCATTAGCATTGGGGTTCTTGAAGCTGTTAAAAATTGC
CTGCTCCAACCCAGGGTTATTAGATAAAGTTACATAATTCAGATTCTGTCAAAATCATCC
CAAAGCAGATTTGCGAGCTCTTGCTCCAACTGGGGGGAAACAATGTGACTCTCAACTCCG
TGGAAATTGTTTCCCTTCTGCGAAAGAAAAAATAAATCATCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8571366|gb|AAF76850.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8571366|gb|AAF76850.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               71-188, - strand, RNAz p=0.961266
               

               
               469-616, + strand, RNAz p=0.712345

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-188, - strand, RNAz p=0.961266
               

               
               469-616, + strand, RNAz p=0.712345

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF230201, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF230201, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-824, gnl|bosTau2|chr13 (62137680-62138493)
               

               
               1-824, gnl|Hg17|chr20 (51538736-51539565)
               

               
               1-824, gnl|Mm7|chr2 (169864545-169865390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-824, gnl|bosTau2|chr13 (62137680-62138493)
               

               
               1-824, gnl|Hg17|chr20 (51538736-51539565)
               

               
               1-824, gnl|Mm7|chr2 (169864545-169865390)

	71-188, - strand, RNAz p=0.961266
	469-616, + strand, RNAz p=0.712345

	1-824, gnl\|bosTau2\|chr13 (62137680-62138493)
	1-824, gnl\|Hg17\|chr20 (51538736-51539565)
	1-824, gnl\|Mm7\|chr2 (169864545-169865390)