Non-Coding RNA Search

Pig4-TMW8050B09

Sequence:


               
               GATCAAATGAAATCAAGGCTGTGGGAACCCTTTTAAAACTGAAAAGAGCTATGTAAATAT
CTATGGTGTTTAGTAGAAGTTTCCAGAGAGCATTCAGAAGGTGCCAGAGTGCTATTTGTA
TTTAGTTTTCGGGAGAGAACCCCTCAATGCCCTTTCCATCTGAGAATAAAGAAAACCCAG
AGCATCCCCTCCTCGCTACCAGGAAGCTGCTCCTGTTTCTCATCTGAGCCTTTTTCAAGG
TTCTCAAAGTATGATCATGTCATAGAGAAAGCTAGTCTGCTTTTAAACACCTTTCTTTAA
CATTATAAGTTATGATGATCACTGGGTTGGTTGATTTTTAAATCTGTGAATTTTTGCATT
TAAACCAGGAACAGTATTCTCTTAGATCAACTCCATCAGCAGGGGTCGTCCAGTTACCTA
GTGAATATTTGAAACCTTGGATACTGATGCCAGGAAACTGGGTTTTCCTGTACTGGGCCT
CCACTGGTGGGAGCAGTGGGAGAGAGGAGGAGACGAGAAGGGAGCAGTCAAGGGAGAACA
GTCTGAAATAGAATTGTCTTTTGCCTTTAGAATTTATGGGTCCCAGGGAGAGTGGAGACT
GGTTCTCAAGAAAGAACAAACAAACTTACAAGTAAAACACTGAAGAAAATTCAGAAGCGC
TGATGTAAAGAATGAAGTGTTTAGGATTTCCGTTTGTGGGGCAGTGGGATCAGGAGTTGT
CTTTGCAGCAAGGGGGTGAAGGTCCAATCTGGGGCCAGCACAGTGGGTTAAGCTGCAGCT
GTGGCTTGGATCTGATCCCCAGCCCAGGAATTCCATAATCCATGGGGCCGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCAAATGAAATCAAGGCTGTGGGAACCCTTTTAAAACTGAAAAGAGCTATGTAAATAT
CTATGGTGTTTAGTAGAAGTTTCCAGAGAGCATTCAGAAGGTGCCAGAGTGCTATTTGTA
TTTAGTTTTCGGGAGAGAACCCCTCAATGCCCTTTCCATCTGAGAATAAAGAAAACCCAG
AGCATCCCCTCCTCGCTACCAGGAAGCTGCTCCTGTTTCTCATCTGAGCCTTTTTCAAGG
TTCTCAAAGTATGATCATGTCATAGAGAAAGCTAGTCTGCTTTTAAACACCTTTCTTTAA
CATTATAAGTTATGATGATCACTGGGTTGGTTGATTTTTAAATCTGTGAATTTTTGCATT
TAAACCAGGAACAGTATTCTCTTAGATCAACTCCATCAGCAGGGGTCGTCCAGTTACCTA
GTGAATATTTGAAACCTTGGATACTGATGCCAGGAAACTGGGTTTTCCTGTACTGGGCCT
CCACTGGTGGGAGCAGTGGGAGAGAGGAGGAGACGAGAAGGGAGCAGTCAAGGGAGAACA
GTCTGAAATAGAATTGTCTTTTGCCTTTAGAATTTATGGGTCCCAGGGAGAGTGGAGACT
GGTTCTCAAGAAAGAACAAACAAACTTACAAGTAAAACACTGAAGAAAATTCAGAAGCGC
TGATGTAAAGAATGAAGTGTTTAGGATTTCCGTTTGTGGGGCAGTGGGATCAGGAGTTGT
CTTTGCAGCAAGGGGGTGAAGGTCCAATCTGGGGCCAGCACAGTGGGTTAAGCTGCAGCT
GTGGCTTGGATCTGATCCCCAGCCCAGGAATTCCATAATCCATGGGGCCGCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-234, - strand, RNAz p=0.967346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-234, - strand, RNAz p=0.967346

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-657, gnl|bosTau2|chr7 (22385502-22386162)
               

               
               1-657, gnl|Hg17|chr5 (180176237-180176879)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-657, gnl|bosTau2|chr7 (22385502-22386162)
               

               
               1-657, gnl|Hg17|chr5 (180176237-180176879)

	1-657, gnl\|bosTau2\|chr7 (22385502-22386162)
	1-657, gnl\|Hg17\|chr5 (180176237-180176879)