Non-Coding RNA Search

Pig4-TMW8051G14

Sequence:


               
               TATGTGTTGGAGTAGTGCAGAGGTGAAAGAAAGGCCCTTTTGGTATGGAGGAGGATGAGA
CATCAGGAGGGCATCCTGGAGGAGATGGTGTTGAGCTGAGCCTTGAGAAGTATGGGCATT
TCCACAGGTAGACAGGGAGAGGCCTTCCAGGTAGAAAGACAACAAGAGTACATGTCTACT
CAGGATTTTCTCAGATTACACTAGATTTTCCCACAAAAATGATGTGTTCAGCAGATCTGT
GCTCTGATTCTGGGATCAGAACTAACATCTAGAAACTTTCTCCTTAAAGTCAGGCAACTC
TGGGACTTAAAGCAGCCTGAGTATTTATATACAAATACTAACTTCTAGCTGAACCTAGTT
TATCCTATTTATTCTCCCAGTTGCAACTTCATCCTTATTATGAGGGATGTCTAGATGTTC
CATGGAACTTTGGCCTATGCTTGATCCATAAGCATTTACTAGACATACCAACCCCTGCAC
TCCTGCTAAGGTTCAAGAACCCATATTTCTCTGAGTCAAAGAAGCAGAGGGTTGGAGTGT
CTGTTAGGATCATATTGTCTAACTCTATGACCTCATTCTTAAACATTTATTGAGATGGGA
ACTTCACTACCTCCAAATATAGCCAATTTCAACTTCAAACCATGCTATCTCTTAAAAATG
TCTCTCTTCTATGCAACCAAAATCACCTCCCAGAATATAGTTAGTATATCTAAAACTTTG
ATTCCATACCATGAGTGTTGTTATTAACAATAATGATCATGCCTGATTTCATTAGAAACA
GAAGCTGATGTTCTACAACATGTGTAGCTGCAACTACACATTTGTTCCAATAAACATCTG
TATTGAGTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTGTTGGAGTAGTGCAGAGGTGAAAGAAAGGCCCTTTTGGTATGGAGGAGGATGAGA
CATCAGGAGGGCATCCTGGAGGAGATGGTGTTGAGCTGAGCCTTGAGAAGTATGGGCATT
TCCACAGGTAGACAGGGAGAGGCCTTCCAGGTAGAAAGACAACAAGAGTACATGTCTACT
CAGGATTTTCTCAGATTACACTAGATTTTCCCACAAAAATGATGTGTTCAGCAGATCTGT
GCTCTGATTCTGGGATCAGAACTAACATCTAGAAACTTTCTCCTTAAAGTCAGGCAACTC
TGGGACTTAAAGCAGCCTGAGTATTTATATACAAATACTAACTTCTAGCTGAACCTAGTT
TATCCTATTTATTCTCCCAGTTGCAACTTCATCCTTATTATGAGGGATGTCTAGATGTTC
CATGGAACTTTGGCCTATGCTTGATCCATAAGCATTTACTAGACATACCAACCCCTGCAC
TCCTGCTAAGGTTCAAGAACCCATATTTCTCTGAGTCAAAGAAGCAGAGGGTTGGAGTGT
CTGTTAGGATCATATTGTCTAACTCTATGACCTCATTCTTAAACATTTATTGAGATGGGA
ACTTCACTACCTCCAAATATAGCCAATTTCAACTTCAAACCATGCTATCTCTTAAAAATG
TCTCTCTTCTATGCAACCAAAATCACCTCCCAGAATATAGTTAGTATATCTAAAACTTTG
ATTCCATACCATGAGTGTTGTTATTAACAATAATGATCATGCCTGATTTCATTAGAAACA
GAAGCTGATGTTCTACAACATGTGTAGCTGCAACTACACATTTGTTCCAATAAACATCTG
TATTGAGTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               444-557, - strand, RNAz p=0.769091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-557, - strand, RNAz p=0.769091

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-181, gnl|bosTau2|chr1 (50000769-50000585)
               

               
               1-181, gnl|canFam2|chr34 (22698126-22698733)
               

               
               1-181, gnl|dasNov1|scaffold_8697 (19906-20476)
               

               
               1-181, gnl|echTel1|scaffold_310990 (1263-1847)
               

               
               1-181, gnl|hg17|chr3 (188418210-188418771)
               

               
               1-181, gnl|Hg17|chr3 (188418677-188418482)
               

               
               1-181, gnl|loxAfr1|scaffold_2404 (116887-116279)
               

               
               1-181, gnl|mm7|chr16 (23108736-23109298)
               

               
               1-181, gnl|Mm7|chr16 (23109214-23109035)
               

               
               1-181, gnl|oryCun1|scaffold_202094 (45510-46060)
               

               
               1-181, gnl|panTro1|chr2 (192502332-192502893)
               

               
               1-181, gnl|rheMac2|chr2 (179553335-179553895)
               

               
               1-181, gnl|rn3|chr11 (79659613-79659060)
               


               
               206-852, gnl|bosTau2|chr1 (50000584-49999936)
               

               
               206-852, gnl|Hg17|chr3 (188418481-188417772)
               

               
               206-852, gnl|Mm7|chr16 (23109034-23107983)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr1 (50000769-50000585)
               

               
               1-181, gnl|canFam2|chr34 (22698126-22698733)
               

               
               1-181, gnl|dasNov1|scaffold_8697 (19906-20476)
               

               
               1-181, gnl|echTel1|scaffold_310990 (1263-1847)
               

               
               1-181, gnl|hg17|chr3 (188418210-188418771)
               

               
               1-181, gnl|Hg17|chr3 (188418677-188418482)
               

               
               1-181, gnl|loxAfr1|scaffold_2404 (116887-116279)
               

               
               1-181, gnl|mm7|chr16 (23108736-23109298)
               

               
               1-181, gnl|Mm7|chr16 (23109214-23109035)
               

               
               1-181, gnl|oryCun1|scaffold_202094 (45510-46060)
               

               
               1-181, gnl|panTro1|chr2 (192502332-192502893)
               

               
               1-181, gnl|rheMac2|chr2 (179553335-179553895)
               

               
               1-181, gnl|rn3|chr11 (79659613-79659060)
               


               
               206-852, gnl|bosTau2|chr1 (50000584-49999936)
               

               
               206-852, gnl|Hg17|chr3 (188418481-188417772)
               

               
               206-852, gnl|Mm7|chr16 (23109034-23107983)

	1-181, gnl\|bosTau2\|chr1 (50000769-50000585)
	1-181, gnl\|canFam2\|chr34 (22698126-22698733)
	1-181, gnl\|dasNov1\|scaffold_8697 (19906-20476)
	1-181, gnl\|echTel1\|scaffold_310990 (1263-1847)
	1-181, gnl\|hg17\|chr3 (188418210-188418771)
	1-181, gnl\|Hg17\|chr3 (188418677-188418482)
	1-181, gnl\|loxAfr1\|scaffold_2404 (116887-116279)
	1-181, gnl\|mm7\|chr16 (23108736-23109298)
	1-181, gnl\|Mm7\|chr16 (23109214-23109035)
	1-181, gnl\|oryCun1\|scaffold_202094 (45510-46060)
	1-181, gnl\|panTro1\|chr2 (192502332-192502893)
	1-181, gnl\|rheMac2\|chr2 (179553335-179553895)
	1-181, gnl\|rn3\|chr11 (79659613-79659060)

	206-852, gnl\|bosTau2\|chr1 (50000584-49999936)
	206-852, gnl\|Hg17\|chr3 (188418481-188417772)
	206-852, gnl\|Mm7\|chr16 (23109034-23107983)