Non-Coding RNA Search

Pig4-TMW8051O22

Sequence:


               
               GTGGTTTTTCCACTGACAAAGCATTCATAGGAAAGTATTTTTGTAGCACTCAAAAAGCAT
ATATCCAGTATTAGCTTTTCATGTGGCTTAGCTTATTTCTAAACAAAATTTTGAGTACAC
ACTTTGTTGTAAAGTCTTGACTGACCATTACAATGAATCCTTTGTTTTAAACTTGCTAAA
CCATTTTTCATCTATCTTTAATATGCAAGTCAAGTTGCTTTTGACTTAATTCATACAAGT
TTCTGGATGTATAGCATTTATCCACCTAGTAATTGATTTTATATATTATGATACATAAAA
TTTCCCTACCAGTGGGAGTTCAGAACTGAATCATAACTTTGCATTATTTCCCTTCTTCAA
AACAATGTAATTAACCATATGGATGTTAAGAATACATTTTCATTTATACATCAAGAACTG
CATATTTGCAGAGCAGTTAATACTTCTACAAAAGAAAAAGAATTTTTAAATTTAAAAATA
AGTGATGCTTTTGGTTTTTTGTTTTTAACAATTTGAAATTGAATTCATTTTAAATATGTA
GTTTTCCCTTTGTTAAAGACTTATTAAACTTTCATATAATTTTTTTGATCTCTTTTAGAA
GGTCAAAGAAATTTTATTTTTTTCACTATGTAGAGATTTAAGTATCCACTTAAAAGTAGG
TTTGTTTGAAAATTGTGAGAAAATAATTATCACCATGAGATATTTTACTGTTCATGTACT
CTGAAGCAGGGTTTTATAGAGCCAAAAAATGTCTTATCCTATAACTATATATTTATTTAT
ATTTTAGCAGTTATACGAACTTAATTTGATCTGGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTTTTTCCACTGACAAAGCATTCATAGGAAAGTATTTTTGTAGCACTCAAAAAGCAT
ATATCCAGTATTAGCTTTTCATGTGGCTTAGCTTATTTCTAAACAAAATTTTGAGTACAC
ACTTTGTTGTAAAGTCTTGACTGACCATTACAATGAATCCTTTGTTTTAAACTTGCTAAA
CCATTTTTCATCTATCTTTAATATGCAAGTCAAGTTGCTTTTGACTTAATTCATACAAGT
TTCTGGATGTATAGCATTTATCCACCTAGTAATTGATTTTATATATTATGATACATAAAA
TTTCCCTACCAGTGGGAGTTCAGAACTGAATCATAACTTTGCATTATTTCCCTTCTTCAA
AACAATGTAATTAACCATATGGATGTTAAGAATACATTTTCATTTATACATCAAGAACTG
CATATTTGCAGAGCAGTTAATACTTCTACAAAAGAAAAAGAATTTTTAAATTTAAAAATA
AGTGATGCTTTTGGTTTTTTGTTTTTAACAATTTGAAATTGAATTCATTTTAAATATGTA
GTTTTCCCTTTGTTAAAGACTTATTAAACTTTCATATAATTTTTTTGATCTCTTTTAGAA
GGTCAAAGAAATTTTATTTTTTTCACTATGTAGAGATTTAAGTATCCACTTAAAAGTAGG
TTTGTTTGAAAATTGTGAGAAAATAATTATCACCATGAGATATTTTACTGTTCATGTACT
CTGAAGCAGGGTTTTATAGAGCCAAAAAATGTCTTATCCTATAACTATATATTTATTTAT
ATTTTAGCAGTTATACGAACTTAATTTGATCTGGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               72-186, - strand, RNAz p=0.850304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-186, - strand, RNAz p=0.850304

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               10-817, gnl|bosTau2|chr1 (84546395-84547192)
               

               
               10-817, gnl|canFam2|chr23 (41675654-41676429)
               

               
               10-817, gnl|dasNov1|scaffold_4505 (6304-5540)
               

               
               10-817, gnl|echTel1|scaffold_299129 (8097-7325)
               

               
               10-817, gnl|hg17|chr3 (144226732-144227475)
               

               
               10-817, gnl|Hg17|chr3 (144226757-144227545)
               

               
               10-817, gnl|loxAfr1|scaffold_10327 (35121-35911)
               

               
               10-817, gnl|mm7|chr9 (95133424-95132660)
               

               
               10-817, gnl|Mm7|chr9 (95133396-95132598)
               

               
               10-817, gnl|monDom2|scaffold_28 (13607872-13608695)
               

               
               10-817, gnl|oryCun1|scaffold_141439 (4-739)
               

               
               10-817, gnl|panTro1|chr2 (146807622-146808364)
               

               
               10-817, gnl|rheMac2|chr2 (144844320-144843579)
               

               
               10-817, gnl|rn3|chr8 (100608329-100607570)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-817, gnl|bosTau2|chr1 (84546395-84547192)
               

               
               10-817, gnl|canFam2|chr23 (41675654-41676429)
               

               
               10-817, gnl|dasNov1|scaffold_4505 (6304-5540)
               

               
               10-817, gnl|echTel1|scaffold_299129 (8097-7325)
               

               
               10-817, gnl|hg17|chr3 (144226732-144227475)
               

               
               10-817, gnl|Hg17|chr3 (144226757-144227545)
               

               
               10-817, gnl|loxAfr1|scaffold_10327 (35121-35911)
               

               
               10-817, gnl|mm7|chr9 (95133424-95132660)
               

               
               10-817, gnl|Mm7|chr9 (95133396-95132598)
               

               
               10-817, gnl|monDom2|scaffold_28 (13607872-13608695)
               

               
               10-817, gnl|oryCun1|scaffold_141439 (4-739)
               

               
               10-817, gnl|panTro1|chr2 (146807622-146808364)
               

               
               10-817, gnl|rheMac2|chr2 (144844320-144843579)
               

               
               10-817, gnl|rn3|chr8 (100608329-100607570)

	10-817, gnl\|bosTau2\|chr1 (84546395-84547192)
	10-817, gnl\|canFam2\|chr23 (41675654-41676429)
	10-817, gnl\|dasNov1\|scaffold_4505 (6304-5540)
	10-817, gnl\|echTel1\|scaffold_299129 (8097-7325)
	10-817, gnl\|hg17\|chr3 (144226732-144227475)
	10-817, gnl\|Hg17\|chr3 (144226757-144227545)
	10-817, gnl\|loxAfr1\|scaffold_10327 (35121-35911)
	10-817, gnl\|mm7\|chr9 (95133424-95132660)
	10-817, gnl\|Mm7\|chr9 (95133396-95132598)
	10-817, gnl\|monDom2\|scaffold_28 (13607872-13608695)
	10-817, gnl\|oryCun1\|scaffold_141439 (4-739)
	10-817, gnl\|panTro1\|chr2 (146807622-146808364)
	10-817, gnl\|rheMac2\|chr2 (144844320-144843579)
	10-817, gnl\|rn3\|chr8 (100608329-100607570)