Non-Coding RNA Search

Pig4-TMW8053A02

Sequence:


               
               TGCTTGGCCAGATTAGAGCTAAATAAACTTTGGTGAATTTCCCTGAGCCTCCGCTTCTTT
ATTTGTTTCTTATTTAGGGGGAGGGGAGACTCCAAATGAGTTATTGCTTATAAAGGACCT
AGCACTGTGTCTGCACCCAGTCCCTTAACAATAATAGTGAAATATTAGTGGTTTGATTTT
TCTGGAACTTAACAAAGTTAAAATGGATCAGATTTTCCCCTTCCTCAAAGATGGACCAAT
TGTTTTAAATTGATGAATTCTGCATTGATCATTACCTGCCCACTTTTTATTTTGCCCAGT
AATCTATTTGGTGGAAATGATTGACCAGGGAGATTCTTTCGGCACTCTTCCCTGTTATTG
GACACTTTGCCCTGATGAAGTGTCATCTCCGATACCTCATTCTTCACTCTTTTTTAGCCA
CATAGAATTCTGTCATTCCACTGAAGGGGAGACTAATGCCTAATTCATAGGCTAACTACT
CTATTTTAGGTTTTTCTTCCTCTCTAAACAACTTAATTTTATCCCAGGAACCTTAATTGG
CTTTGGTTATAATATAAAAGTATATCTTAGTGTGAGGAAAAGCATGGAAATGGAAATAAC
TTTGTGTCCATCTTCGAATGACCTGAGGTTCCTTAGAACTAACCTGATTCTCCTGCCTTG
GAATCTTCCCATTAATGGCAAATCATTCTCTTAATTAGCTGAGGTGACTAGCAATAGTGA
TGAGGCCAAGCCACTTTCTTTCTGCTGGCCTCCTCTTAAGTGCTGGGACTGTGTGAAGTT
CTTGTCACCAACGGGTAGTTTTCAACCTTGAGCGTGAAGAAGACTCATGTGGGGAGTGAG
TGTTAATTTCTGGTTCCCAGCTCCAAAATTGTGTGTTATGCTCTGGGGCATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTGGCCAGATTAGAGCTAAATAAACTTTGGTGAATTTCCCTGAGCCTCCGCTTCTTT
ATTTGTTTCTTATTTAGGGGGAGGGGAGACTCCAAATGAGTTATTGCTTATAAAGGACCT
AGCACTGTGTCTGCACCCAGTCCCTTAACAATAATAGTGAAATATTAGTGGTTTGATTTT
TCTGGAACTTAACAAAGTTAAAATGGATCAGATTTTCCCCTTCCTCAAAGATGGACCAAT
TGTTTTAAATTGATGAATTCTGCATTGATCATTACCTGCCCACTTTTTATTTTGCCCAGT
AATCTATTTGGTGGAAATGATTGACCAGGGAGATTCTTTCGGCACTCTTCCCTGTTATTG
GACACTTTGCCCTGATGAAGTGTCATCTCCGATACCTCATTCTTCACTCTTTTTTAGCCA
CATAGAATTCTGTCATTCCACTGAAGGGGAGACTAATGCCTAATTCATAGGCTAACTACT
CTATTTTAGGTTTTTCTTCCTCTCTAAACAACTTAATTTTATCCCAGGAACCTTAATTGG
CTTTGGTTATAATATAAAAGTATATCTTAGTGTGAGGAAAAGCATGGAAATGGAAATAAC
TTTGTGTCCATCTTCGAATGACCTGAGGTTCCTTAGAACTAACCTGATTCTCCTGCCTTG
GAATCTTCCCATTAATGGCAAATCATTCTCTTAATTAGCTGAGGTGACTAGCAATAGTGA
TGAGGCCAAGCCACTTTCTTTCTGCTGGCCTCCTCTTAAGTGCTGGGACTGTGTGAAGTT
CTTGTCACCAACGGGTAGTTTTCAACCTTGAGCGTGAAGAAGACTCATGTGGGGAGTGAG
TGTTAATTTCTGGTTCCCAGCTCCAAAATTGTGTGTTATGCTCTGGGGCATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               346-535, - strand, RNAz p=0.973587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-535, - strand, RNAz p=0.973587

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-535, gnl|bosTau2|chr20 (10176021-10175562)
               

               
               76-535, gnl|Hg17|chr5 (60658666-60659196)
               

               
               76-535, gnl|Mm7|chr13 (105023691-105023254)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-535, gnl|bosTau2|chr20 (10176021-10175562)
               

               
               76-535, gnl|Hg17|chr5 (60658666-60659196)
               

               
               76-535, gnl|Mm7|chr13 (105023691-105023254)

	76-535, gnl\|bosTau2\|chr20 (10176021-10175562)
	76-535, gnl\|Hg17\|chr5 (60658666-60659196)
	76-535, gnl\|Mm7\|chr13 (105023691-105023254)