Non-Coding RNA Search

Pig4-TMW8055N02

Sequence:


               
               CAGAAGCTGGCCCAGCTTCCAGAGCTTGCATCCGCCGAGATCAGTCTCCATGCCATCTAC
CTGCACCAGCTCCATCAGCAGCAGCAGCAGGAACTGTGGGGCGAGGCTTCAGCCTCCTCC
CTGTCCAGGCCCTGGTCCAGCCCCTCGCAAACACTCTCACCGGATGAGGAGAAGCCATCC
TGGTCAAGTGACGGCTCCAGTCCTGCCTCCAGCCCCAGACAGCAGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGCTGGCCCAGCTTCCAGAGCTTGCATCCGCCGAGATCAGTCTCCATGCCATCTAC
CTGCACCAGCTCCATCAGCAGCAGCAGCAGGAACTGTGGGGCGAGGCTTCAGCCTCCTCC
CTGTCCAGGCCCTGGTCCAGCCCCTCGCAAACACTCTCACCGGATGAGGAGAAGCCATCC
TGGTCAAGTGACGGCTCCAGTCCTGCCTCCAGCCCCAGACAGCAGTGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               56-159, - strand, RNAz p=0.911255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-159, - strand, RNAz p=0.911255

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               56-194, gnl|bosTau2|chr4 (64573711-64573851)
               

               
               56-194, gnl|canFam2|chr16 (18021944-18022093)
               

               
               56-194, gnl|dasNov1|scaffold_19002 (65255-65404)
               

               
               56-194, gnl|hg17|chr7 (150150839-150150991)
               

               
               56-194, gnl|Hg17|chr7 (150150987-150150844)
               

               
               56-194, gnl|mm7|chr5 (23425933-23426087)
               

               
               56-194, gnl|Mm7|chr5 (23426090-23425938)
               

               
               56-194, gnl|monDom2|scaffold_7 (11152908-11153078)
               

               
               56-194, gnl|oryCun1|scaffold_204516 (92463-92614)
               

               
               56-194, gnl|panTro1|chr6_random (16776924-16776772)
               

               
               56-194, gnl|rheMac2|chr3 (187961993-187962142)
               

               
               56-194, gnl|rn3|chr4 (6157588-6157434)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-194, gnl|bosTau2|chr4 (64573711-64573851)
               

               
               56-194, gnl|canFam2|chr16 (18021944-18022093)
               

               
               56-194, gnl|dasNov1|scaffold_19002 (65255-65404)
               

               
               56-194, gnl|hg17|chr7 (150150839-150150991)
               

               
               56-194, gnl|Hg17|chr7 (150150987-150150844)
               

               
               56-194, gnl|mm7|chr5 (23425933-23426087)
               

               
               56-194, gnl|Mm7|chr5 (23426090-23425938)
               

               
               56-194, gnl|monDom2|scaffold_7 (11152908-11153078)
               

               
               56-194, gnl|oryCun1|scaffold_204516 (92463-92614)
               

               
               56-194, gnl|panTro1|chr6_random (16776924-16776772)
               

               
               56-194, gnl|rheMac2|chr3 (187961993-187962142)
               

               
               56-194, gnl|rn3|chr4 (6157588-6157434)

	56-194, gnl\|bosTau2\|chr4 (64573711-64573851)
	56-194, gnl\|canFam2\|chr16 (18021944-18022093)
	56-194, gnl\|dasNov1\|scaffold_19002 (65255-65404)
	56-194, gnl\|hg17\|chr7 (150150839-150150991)
	56-194, gnl\|Hg17\|chr7 (150150987-150150844)
	56-194, gnl\|mm7\|chr5 (23425933-23426087)
	56-194, gnl\|Mm7\|chr5 (23426090-23425938)
	56-194, gnl\|monDom2\|scaffold_7 (11152908-11153078)
	56-194, gnl\|oryCun1\|scaffold_204516 (92463-92614)
	56-194, gnl\|panTro1\|chr6_random (16776924-16776772)
	56-194, gnl\|rheMac2\|chr3 (187961993-187962142)
	56-194, gnl\|rn3\|chr4 (6157588-6157434)