Non-Coding RNA Search

Pig4-TMW8060C16

Sequence:


               
               GCTGGGCAGAGACCTCCACAGTTTGTCCTGCACTCCTGTCACTTTGATTTCTGCCTTCTC
TTTGTCTGGCTCCTTGGTCTCTTGCTTCTCTAGGTGGTTGTGTCCCCCTCCTGGCACTTT
GTTTCCCTCACTCCCTCTTACTCCTCGTCCCAAGCTCCTTCTGGGTCTGGTTTCCCCTTC
TCCCTTCCCCCTCCCCATCCTCCTTTTTTCTTTCTAGAGGCTGTGCCTGGAAGGAAGGGA
GGGGGCAAGCCTGAATCCTAGCTACTCCTTTGCGGTGGCCACAGGAACAGATGGCCACTG
GCTGTTGGCAGGGGCTTGTGATTGAAGGGCTAGTAAAAGGTTAGGAGGGGGATGAAAGAA
CGGAGATAGCTCCCAGAAAAGTGGGAGAGGCCAGAGGACCCAAGGAGGCCCTTCCCAGAG
GAAGGATGGAGGAAAGGGGAAAATAGAGCAAAAGAGGGAGAGTAGTCAGGGAACAAAAAA
AAAAAAAGTGGAGGAGGGGAGGTGATGTCAGCCAGCCTCTGGCCACTTTTCTGGGACTGG
TGACAAAGGGAGGAGACAGCTGGCATGATGGGACAGTGGGAGGAGGCCTCCCTGAGAGTG
TGTGGCCCACTGCCACCCTCCTTTAAGGCAACCAGCCGCTCCCTCACTAGTCAGAGGCCC
TAAGGAAGGGGTAGAGCTGGGGTGGCCACACCCCTCATCAATCAGACTATCAGGAACTCT
GGCCTGGGTTCCCTCAATTGCAAGACCCGGAGGGTTGGTCCCATTGGACAGAATTCAAAC
CTGACACTGGGAGGAGCTCTCCACAGCCTCACCCCTGCTTTCTGAATCCCTGCTGCTCTG
TGCCCTTTCCACCTTTCCCTCTACCCTGGGATTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGCAGAGACCTCCACAGTTTGTCCTGCACTCCTGTCACTTTGATTTCTGCCTTCTC
TTTGTCTGGCTCCTTGGTCTCTTGCTTCTCTAGGTGGTTGTGTCCCCCTCCTGGCACTTT
GTTTCCCTCACTCCCTCTTACTCCTCGTCCCAAGCTCCTTCTGGGTCTGGTTTCCCCTTC
TCCCTTCCCCCTCCCCATCCTCCTTTTTTCTTTCTAGAGGCTGTGCCTGGAAGGAAGGGA
GGGGGCAAGCCTGAATCCTAGCTACTCCTTTGCGGTGGCCACAGGAACAGATGGCCACTG
GCTGTTGGCAGGGGCTTGTGATTGAAGGGCTAGTAAAAGGTTAGGAGGGGGATGAAAGAA
CGGAGATAGCTCCCAGAAAAGTGGGAGAGGCCAGAGGACCCAAGGAGGCCCTTCCCAGAG
GAAGGATGGAGGAAAGGGGAAAATAGAGCAAAAGAGGGAGAGTAGTCAGGGAACAAAAAA
AAAAAAAGTGGAGGAGGGGAGGTGATGTCAGCCAGCCTCTGGCCACTTTTCTGGGACTGG
TGACAAAGGGAGGAGACAGCTGGCATGATGGGACAGTGGGAGGAGGCCTCCCTGAGAGTG
TGTGGCCCACTGCCACCCTCCTTTAAGGCAACCAGCCGCTCCCTCACTAGTCAGAGGCCC
TAAGGAAGGGGTAGAGCTGGGGTGGCCACACCCCTCATCAATCAGACTATCAGGAACTCT
GGCCTGGGTTCCCTCAATTGCAAGACCCGGAGGGTTGGTCCCATTGGACAGAATTCAAAC
CTGACACTGGGAGGAGCTCTCCACAGCCTCACCCCTGCTTTCTGAATCCCTGCTGCTCTG
TGCCCTTTCCACCTTTCCCTCTACCCTGGGATTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               162-274, - strand, RNAz p=0.999516
               

               
               545-700, - strand, RNAz p=0.990181

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-274, - strand, RNAz p=0.999516
               

               
               545-700, - strand, RNAz p=0.990181

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-824, gnl|bosTau2|chr10 (13762887-13763692)
               

               
               4-824, gnl|Hg17|chr14 (22904028-22903225)
               

               
               4-824, gnl|Mm7|chr14 (49792008-49791260)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-824, gnl|bosTau2|chr10 (13762887-13763692)
               

               
               4-824, gnl|Hg17|chr14 (22904028-22903225)
               

               
               4-824, gnl|Mm7|chr14 (49792008-49791260)

	162-274, - strand, RNAz p=0.999516
	545-700, - strand, RNAz p=0.990181

	4-824, gnl\|bosTau2\|chr10 (13762887-13763692)
	4-824, gnl\|Hg17\|chr14 (22904028-22903225)
	4-824, gnl\|Mm7\|chr14 (49792008-49791260)