Non-Coding RNA Search

Pig4-TMW8061G11

Sequence:


               
               GACTGGATCTGTCTGTGTGCCGCTGGCGCTGGAAGGGACGTGGCAACCTGTGCTCCAGAC
CCTGCCTTCACATGCGGAAGCTTTGTCCCTTGAAATGCTTTTATGATTGAAATCACTTGA
ATGTCTGGGGTTGCCCTTCTTTTTGGCTATATTTTTTTTCGGGCCAGATTTCCTCTGCAG
CCTGCCGGGTACCCTTTAGGGATCCCTAAAGCTGAGCGTCCGAGGGCCCAACTCCCGTCG
TCCCCTGGCCTCTGTTTAACTCCTTTTAAAAATAGGGCCATGAAGTAATTTTCCTTGTAG
CCCATGGCTGACTCTCCCTGGCTGCCCCACACAGTCTCCCCAGGCTTATTTAAATAAAAC
ACACACTCACACCAACCACCAAAAAAACCTGCCCTTTATGATTTTTCCATGGAGTCACCT
ATACTGTGTATTTTCATTTGAGTGATTTAAAAAAAATGCCCTTTCGGATCTCCTGCCGGA
GTTTCCTATCCGGACATCTGCAGCCTGAATATAAGGAAACTTCGTGTATCTGTTTCCGGA
CTCCGCGAGTTTTTAGAGTCTCTCCTCGGCTCAGTCCTGCCTCTCGCTGGGCTGTTTTGA
AATTTCTAATACTCTCCACTCTGCAAATGATGCGTAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGGATCTGTCTGTGTGCCGCTGGCGCTGGAAGGGACGTGGCAACCTGTGCTCCAGAC
CCTGCCTTCACATGCGGAAGCTTTGTCCCTTGAAATGCTTTTATGATTGAAATCACTTGA
ATGTCTGGGGTTGCCCTTCTTTTTGGCTATATTTTTTTTCGGGCCAGATTTCCTCTGCAG
CCTGCCGGGTACCCTTTAGGGATCCCTAAAGCTGAGCGTCCGAGGGCCCAACTCCCGTCG
TCCCCTGGCCTCTGTTTAACTCCTTTTAAAAATAGGGCCATGAAGTAATTTTCCTTGTAG
CCCATGGCTGACTCTCCCTGGCTGCCCCACACAGTCTCCCCAGGCTTATTTAAATAAAAC
ACACACTCACACCAACCACCAAAAAAACCTGCCCTTTATGATTTTTCCATGGAGTCACCT
ATACTGTGTATTTTCATTTGAGTGATTTAAAAAAAATGCCCTTTCGGATCTCCTGCCGGA
GTTTCCTATCCGGACATCTGCAGCCTGAATATAAGGAAACTTCGTGTATCTGTTTCCGGA
CTCCGCGAGTTTTTAGAGTCTCTCCTCGGCTCAGTCCTGCCTCTCGCTGGGCTGTTTTGA
AATTTCTAATACTCTCCACTCTGCAAATGATGCGTAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-614, - strand, RNAz p=0.96938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-614, - strand, RNAz p=0.96938

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               536-613, + strand, RNAmicro p=0.904679

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               536-613, + strand, RNAmicro p=0.904679

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               89-637, gnl|bosTau2|chr22 (46083203-46083763)
               

               
               89-637, gnl|Hg17|chr3 (129685302-129684731)
               

               
               89-637, gnl|Mm7|chr6 (88277818-88278417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-637, gnl|bosTau2|chr22 (46083203-46083763)
               

               
               89-637, gnl|Hg17|chr3 (129685302-129684731)
               

               
               89-637, gnl|Mm7|chr6 (88277818-88278417)

	89-637, gnl\|bosTau2\|chr22 (46083203-46083763)
	89-637, gnl\|Hg17\|chr3 (129685302-129684731)
	89-637, gnl\|Mm7\|chr6 (88277818-88278417)