Non-Coding RNA Search

Pig4-TMW8062C16

Sequence:


               
               CTTAGAAGGAGCAGTTAGGGTTATTGCTAGGATGCATTTAAGGGGGACTCAAGGTGAATG
AAAGGTCTGGAGCTTTGCCCCCTTCCCCATTAGTACTGGGGCAAGAATGGGGATGCTTGG
ATAGGTATTATTCAGCCCCCTTCGGCCAAAAGGAAAGTTGCCCTGGGAAGGGAAGTTGAG
TTCAGGTTCTGCCAGCGGCGTTGCGCATTTGTTTTCCATTGGATGCAGGAGGGGGAGTTT
GAATTGTTGGGGAAGGGGGAGAATGGGATGGGGGATGCGGGGAGGAGGAAGAGCAGCTGC
TAGGGGCTGAAGAGAAGGGGGGCAGGGGGTTGCTGCTCTGGAGTGCTCTTGATTGAAACA
GAAAGGGAAAGATAACAACCAGCCGTTTCCTGCGTGCTCTGCCCGTTGGTGCACACAAAA
TATCCTGGGCAAACCCCTCGTCCCCTATTGTGCCCCACACCCCTGTAGATCTCCGGAAAG
ATCCTGGGAAGTGGGCGGGGGAGGAGATCCCAGGGACCCCAGCCTCTTCTTTCAAGGAGT
TGGCAATTTTTTAGTTGTTAGTCTTCCTGCCTTCTTTTTTAAATCGTTTCTAAGGCAGCC
TGATCAGGAGACTGACAACAACCCGCCTTCTGACAGAGCAAGGAGGACATGATGGGGGCG
TGTTCCTTGCTGTGTAACTAACTGCAGTGTCCCTTTTCCCTGCCTCTCTCTGCTCTCTCT
CCACCTCCTTTTCCCAGCCTTCAGAAGGCAGCTGCAGTCAGCAGGGTTGTTTGAGACTAT
TTATTGGTTGCTGTAGATTATTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGAAGGAGCAGTTAGGGTTATTGCTAGGATGCATTTAAGGGGGACTCAAGGTGAATG
AAAGGTCTGGAGCTTTGCCCCCTTCCCCATTAGTACTGGGGCAAGAATGGGGATGCTTGG
ATAGGTATTATTCAGCCCCCTTCGGCCAAAAGGAAAGTTGCCCTGGGAAGGGAAGTTGAG
TTCAGGTTCTGCCAGCGGCGTTGCGCATTTGTTTTCCATTGGATGCAGGAGGGGGAGTTT
GAATTGTTGGGGAAGGGGGAGAATGGGATGGGGGATGCGGGGAGGAGGAAGAGCAGCTGC
TAGGGGCTGAAGAGAAGGGGGGCAGGGGGTTGCTGCTCTGGAGTGCTCTTGATTGAAACA
GAAAGGGAAAGATAACAACCAGCCGTTTCCTGCGTGCTCTGCCCGTTGGTGCACACAAAA
TATCCTGGGCAAACCCCTCGTCCCCTATTGTGCCCCACACCCCTGTAGATCTCCGGAAAG
ATCCTGGGAAGTGGGCGGGGGAGGAGATCCCAGGGACCCCAGCCTCTTCTTTCAAGGAGT
TGGCAATTTTTTAGTTGTTAGTCTTCCTGCCTTCTTTTTTAAATCGTTTCTAAGGCAGCC
TGATCAGGAGACTGACAACAACCCGCCTTCTGACAGAGCAAGGAGGACATGATGGGGGCG
TGTTCCTTGCTGTGTAACTAACTGCAGTGTCCCTTTTCCCTGCCTCTCTCTGCTCTCTCT
CCACCTCCTTTTCCCAGCCTTCAGAAGGCAGCTGCAGTCAGCAGGGTTGTTTGAGACTAT
TTATTGGTTGCTGTAGATTATTATTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               10-247, + strand, RNAz p=0.895609
               

               
               442-784, - strand, RNAz p=0.999058

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-247, + strand, RNAz p=0.895609
               

               
               442-784, - strand, RNAz p=0.999058

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               573-639, + strand, RNAmicro p=0.911096

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               573-639, + strand, RNAmicro p=0.911096

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               546-784, AU145828 HEMBA1 Homo sapiens cDNA clone HEMBA1006005 3', mRNA 
(dbj|AU145828.2|), blast E-value=1e-25, identity=100% 
               

               
               546-784, AV662329 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 
(dbj|AV662329.1|), blast E-value=1e-25, identity=100% 
               

               
               442-775, AV662330 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 
(dbj|AV662330.1|), blast E-value=0.00000000000003, identity=94.44% 
               

               
               442-693, BX282289 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998A216204 ; 
(emb|BX282289.1|), blast E-value=0, identity=91.3% 
               

               
               546-784, aa81d02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE 
(gb|AA668996.1|), blast E-value=1e-25, identity=100% 
               

               
               529-784, wr68a11.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb|AI978929.1|), 
blast E-value=1e-25, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               546-784, AU145828 HEMBA1 Homo sapiens cDNA clone HEMBA1006005 3', mRNA 
(dbj|AU145828.2|), blast E-value=1e-25, identity=100% 
               

               
               546-784, AV662329 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 
(dbj|AV662329.1|), blast E-value=1e-25, identity=100% 
               

               
               442-775, AV662330 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 
(dbj|AV662330.1|), blast E-value=0.00000000000003, identity=94.44% 
               

               
               442-693, BX282289 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998A216204 ; 
(emb|BX282289.1|), blast E-value=0, identity=91.3% 
               

               
               546-784, aa81d02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE 
(gb|AA668996.1|), blast E-value=1e-25, identity=100% 
               

               
               529-784, wr68a11.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb|AI978929.1|), 
blast E-value=1e-25, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-808, gnl|bosTau2|chr15 (15094427-15093631)
               

               
               10-808, gnl|Hg17|chr11 (117814128-117814918)
               

               
               10-808, gnl|Mm7|chr9 (44813946-44813179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-808, gnl|bosTau2|chr15 (15094427-15093631)
               

               
               10-808, gnl|Hg17|chr11 (117814128-117814918)
               

               
               10-808, gnl|Mm7|chr9 (44813946-44813179)

	10-247, + strand, RNAz p=0.895609
	442-784, - strand, RNAz p=0.999058

	546-784, AU145828 HEMBA1 Homo sapiens cDNA clone HEMBA1006005 3', mRNA (dbj\|AU145828.2\|), blast E-value=1e-25, identity=100%
	546-784, AV662329 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 (dbj\|AV662329.1\|), blast E-value=1e-25, identity=100%
	442-775, AV662330 Bos taurus brain fetus Bos taurus cDNA clone E1BR030A04 (dbj\|AV662330.1\|), blast E-value=0.00000000000003, identity=94.44%
	442-693, BX282289 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998A216204 ; (emb\|BX282289.1\|), blast E-value=0, identity=91.3%
	546-784, aa81d02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE (gb\|AA668996.1\|), blast E-value=1e-25, identity=100%
	529-784, wr68a11.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb\|AI978929.1\|), blast E-value=1e-25, identity=100%

	10-808, gnl\|bosTau2\|chr15 (15094427-15093631)
	10-808, gnl\|Hg17\|chr11 (117814128-117814918)
	10-808, gnl\|Mm7\|chr9 (44813946-44813179)