Non-Coding RNA Search

Pig4-TMW8062D18

Sequence:


               
               GATGGCTGAGAGCTAGCAAGGAAAATCCAGGACCATGATGGCTCAGTTTCCCACTGCTAT
GAATGGAGGGCCAAACATGTGGGCTATTACATCTGAAGAACGGACTAAGCATGACAAGCA
GTTTGATAACCTCAAACCCTCAGGAGGTTACATAACAGGTGATCAAGCACGTACCTTTTT
CTTACAGTCAGGCCTGCCAGCTCCTGTTTTAGCTGAAATATGGGCTTTATCAGACCTGAA
CAAGGATGGGAAGATGGATCAGCAAGAGTTCTCCATAGCTATGAAACTCATCAAACTGAA
GCTTCAAGGCCAACAATTACCCGTGGTTCTTCCTCCTATTATGAAACAACCTCCTATGTT
CTCTCCATTAATTTCTGCTCGTTTTGGAATGGGAAGCATGCCCAACCTGTCCATTCCTCA
GTCATTGCCTCCAGTTGCACCTATAGCAACACCCTTGCCCTCTGCGACTTCAGGGACCAC
CCTTCCTCCTTTAATGATGCCTGCTCCCCTAGTGCCTTCCGTTAGCACTTCATCATTACC
AAATGGAACCGCCAGTCTCATTCAGCCCTTATCCATTCCTTATTCTTCTTCAACATTGCC
TCATACGTCATCTTACAGTCTGATGATGGGAGGATTTGGTGGTGCTAGTATACAGAAAGC
CCAGTCTCTGATTGATTTAGGATCTAGTAGCTCAACTTCCTCAACTGCTTCCCTCTCAGG
GAACTCACCCAAGACTGGGACCTCAGAGTGGGCAGTTCCTCATCCTTCAAGATTAAAGTA
TCGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCTGAGAGCTAGCAAGGAAAATCCAGGACCATGATGGCTCAGTTTCCCACTGCTAT
GAATGGAGGGCCAAACATGTGGGCTATTACATCTGAAGAACGGACTAAGCATGACAAGCA
GTTTGATAACCTCAAACCCTCAGGAGGTTACATAACAGGTGATCAAGCACGTACCTTTTT
CTTACAGTCAGGCCTGCCAGCTCCTGTTTTAGCTGAAATATGGGCTTTATCAGACCTGAA
CAAGGATGGGAAGATGGATCAGCAAGAGTTCTCCATAGCTATGAAACTCATCAAACTGAA
GCTTCAAGGCCAACAATTACCCGTGGTTCTTCCTCCTATTATGAAACAACCTCCTATGTT
CTCTCCATTAATTTCTGCTCGTTTTGGAATGGGAAGCATGCCCAACCTGTCCATTCCTCA
GTCATTGCCTCCAGTTGCACCTATAGCAACACCCTTGCCCTCTGCGACTTCAGGGACCAC
CCTTCCTCCTTTAATGATGCCTGCTCCCCTAGTGCCTTCCGTTAGCACTTCATCATTACC
AAATGGAACCGCCAGTCTCATTCAGCCCTTATCCATTCCTTATTCTTCTTCAACATTGCC
TCATACGTCATCTTACAGTCTGATGATGGGAGGATTTGGTGGTGCTAGTATACAGAAAGC
CCAGTCTCTGATTGATTTAGGATCTAGTAGCTCAACTTCCTCAACTGCTTCCCTCTCAGG
GAACTCACCCAAGACTGGGACCTCAGAGTGGGCAGTTCCTCATCCTTCAAGATTAAAGTA
TCGGCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859056|ref|XP_608899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859056|ref|XP_608899.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               413-532, - strand, RNAz p=0.632072

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-532, - strand, RNAz p=0.632072

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-790, gnl|bosTau2|chr11 (56186058-56186847)
               

               
               1-790, gnl|Hg17|chr2 (24494359-24443177)
               

               
               1-790, gnl|Mm7|chr12 (4545559-4563053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr11 (56186058-56186847)
               

               
               1-790, gnl|Hg17|chr2 (24494359-24443177)
               

               
               1-790, gnl|Mm7|chr12 (4545559-4563053)

	1-790, gnl\|bosTau2\|chr11 (56186058-56186847)
	1-790, gnl\|Hg17\|chr2 (24494359-24443177)
	1-790, gnl\|Mm7\|chr12 (4545559-4563053)