Non-Coding RNA Search

Pig4-TMW8062I15

Sequence:


               
               TAATTCTCCAGGGCAGCATCCTTGTGTTTGACTTGGTTGTTTACTTTTATTGGAGCCTAG
ATGTTGGCAAGTGATATGTTCATGTGTAGTTTTTAAGCTGGTTGAGCCGCCCGGTAGGCT
GCTTGTTGTAATGAGCTGTAGGACAGCACCAGCTTTGTAAGCAACCTAGCAATCTTTTAC
CAAAATTCTTTTTGCAAATGCTGCAGATACCTTCCCCctcagatgctctttgaaccagct
ttaccatcctgctggtttcttcattatggagttgaataaGTCTTGACGCATGTTTCATCT
ATACTTTTATAGGAGTCCTCTTATTAAATTTGGGAAAAATTTTCTTTGTCAAGATTTTAA
ACTCTCATGTGAGACAGAATTATTACCGTTCACTATGATACATAGATAGATAGATAGGTA
GATAGATAGGTAGATAGATAGATAGATATCTCAGTGGTGTATGGTAGTATTTCTAAACCC
TCAACCATGTTATGTGGTGGTTCCCTGGAGTTCTCACTCTTGTTCTTCAGGGAATATCAG
ACATTAAATATATTTAGTTCCACTACACTCCCACGCCCTGATTATTCTCTCATTATCCCT
CACCTTCCACCAGTCCTGTATTTCTCCCTCTCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTCTCCAGGGCAGCATCCTTGTGTTTGACTTGGTTGTTTACTTTTATTGGAGCCTAG
ATGTTGGCAAGTGATATGTTCATGTGTAGTTTTTAAGCTGGTTGAGCCGCCCGGTAGGCT
GCTTGTTGTAATGAGCTGTAGGACAGCACCAGCTTTGTAAGCAACCTAGCAATCTTTTAC
CAAAATTCTTTTTGCAAATGCTGCAGATACCTTCCCCctcagatgctctttgaaccagct
ttaccatcctgctggtttcttcattatggagttgaataaGTCTTGACGCATGTTTCATCT
ATACTTTTATAGGAGTCCTCTTATTAAATTTGGGAAAAATTTTCTTTGTCAAGATTTTAA
ACTCTCATGTGAGACAGAATTATTACCGTTCACTATGATACATAGATAGATAGATAGGTA
GATAGATAGGTAGATAGATAGATAGATATCTCAGTGGTGTATGGTAGTATTTCTAAACCC
TCAACCATGTTATGTGGTGGTTCCCTGGAGTTCTCACTCTTGTTCTTCAGGGAATATCAG
ACATTAAATATATTTAGTTCCACTACACTCCCACGCCCTGATTATTCTCTCATTATCCCT
CACCTTCCACCAGTCCTGTATTTCTCCCTCTCCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3-118, + strand, RNAz p=0.872047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-118, + strand, RNAz p=0.872047

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-404, gnl|bosTau2|chr4 (33011670-33012081)
               

               
               3-404, gnl|Hg17|chr7 (36975798-36975406)
               

               
               3-404, gnl|Mm7|chr13 (19691362-19691719)
               


               
               470-631, gnl|bosTau2|chr4 (33012407-33012567)
               

               
               470-631, gnl|Hg17|chr7 (36975113-36974872)
               

               
               470-631, gnl|Mm7|chr13 (19692109-19692343)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-404, gnl|bosTau2|chr4 (33011670-33012081)
               

               
               3-404, gnl|Hg17|chr7 (36975798-36975406)
               

               
               3-404, gnl|Mm7|chr13 (19691362-19691719)
               


               
               470-631, gnl|bosTau2|chr4 (33012407-33012567)
               

               
               470-631, gnl|Hg17|chr7 (36975113-36974872)
               

               
               470-631, gnl|Mm7|chr13 (19692109-19692343)

	3-404, gnl\|bosTau2\|chr4 (33011670-33012081)
	3-404, gnl\|Hg17\|chr7 (36975798-36975406)
	3-404, gnl\|Mm7\|chr13 (19691362-19691719)

	470-631, gnl\|bosTau2\|chr4 (33012407-33012567)
	470-631, gnl\|Hg17\|chr7 (36975113-36974872)
	470-631, gnl\|Mm7\|chr13 (19692109-19692343)