Non-Coding RNA Search

Pig4-TMW8062O10

Sequence:


               
               CACGTGACCAAAGATTCTGGATGAAAAATTCACTTGAGATGTCCCTCTGAGCGGCGGGGA
TGGTCACCACCTCTGCCCCATTTCTGCTGCCATATTTCTGAGGTCTGGGGTGACCATTGT
CCTAGTTAACTTGACGTCCTGTCCCTTCTAGCACACGTCCTGGATTTGTCATCTTTTCCA
CAGTTTTAGAGTTTTTATTAATAATAGTTTTTAAATGGAATTTTTATAGTTTTTTTAATA
AAACATTTGTGATCAAAAGAATTTTTTAATGTAATTTATTTTTAGCACTCCCTTTTACTC
CTGAAGAGATATCTTCATCTGAATAGTGTTTTTATGGTCACCCCTTTCCCCCAGCACCCA
AGTGCCCAGCAGAGTGCCTGGTACATGGCAGACACTCAGCCACCGTTTGAACTTCTCCAA
AAAGTGTGAATTAAATTGATGACAATTGTTGATTGTACTGGAATAAGAATGCATTAAGAT
GAAAATAGCGTCCTGTGAATCACCTTTGTGCCATGTTCAGTCTTTGATAGGAGCATTGCT
GGTTTGGGGTTTTAATGTTTTTAGAAAAGAACACAAGTACATTGTAAAAAAACTTTTAAC
TTTCCCCTGTGTATTCTTTTTTACGACTCTTACAGCATTACTGTTACATTTTCATTTTGA
AATATACATACAGGAAGTTGTTTTTTAGGAATAGCCGGCTGAGGTAAAAATAACATTACC
ATTCACCATTACTTTTTAAGTATTATGCAGGCAGGCAACCAAAGAGACTACCCCCCGTAT
TGTGTGTACAAAACCCCAATTTCTATGGATATTTTTCTATGTGAAAAAAATCGTATGGAC
TTTTATAAATATTGTTTCTAACACAATTCTATATTTGTAAATTAATTTATAATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGTGACCAAAGATTCTGGATGAAAAATTCACTTGAGATGTCCCTCTGAGCGGCGGGGA
TGGTCACCACCTCTGCCCCATTTCTGCTGCCATATTTCTGAGGTCTGGGGTGACCATTGT
CCTAGTTAACTTGACGTCCTGTCCCTTCTAGCACACGTCCTGGATTTGTCATCTTTTCCA
CAGTTTTAGAGTTTTTATTAATAATAGTTTTTAAATGGAATTTTTATAGTTTTTTTAATA
AAACATTTGTGATCAAAAGAATTTTTTAATGTAATTTATTTTTAGCACTCCCTTTTACTC
CTGAAGAGATATCTTCATCTGAATAGTGTTTTTATGGTCACCCCTTTCCCCCAGCACCCA
AGTGCCCAGCAGAGTGCCTGGTACATGGCAGACACTCAGCCACCGTTTGAACTTCTCCAA
AAAGTGTGAATTAAATTGATGACAATTGTTGATTGTACTGGAATAAGAATGCATTAAGAT
GAAAATAGCGTCCTGTGAATCACCTTTGTGCCATGTTCAGTCTTTGATAGGAGCATTGCT
GGTTTGGGGTTTTAATGTTTTTAGAAAAGAACACAAGTACATTGTAAAAAAACTTTTAAC
TTTCCCCTGTGTATTCTTTTTTACGACTCTTACAGCATTACTGTTACATTTTCATTTTGA
AATATACATACAGGAAGTTGTTTTTTAGGAATAGCCGGCTGAGGTAAAAATAACATTACC
ATTCACCATTACTTTTTAAGTATTATGCAGGCAGGCAACCAAAGAGACTACCCCCCGTAT
TGTGTGTACAAAACCCCAATTTCTATGGATATTTTTCTATGTGAAAAAAATCGTATGGAC
TTTTATAAATATTGTTTCTAACACAATTCTATATTTGTAAATTAATTTATAATGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               354-470, - strand, RNAz p=0.905922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-470, - strand, RNAz p=0.905922

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-896, gnl|bosTau2|chr11 (36011481-36010635)
               

               
               5-896, gnl|Hg17|chr2 (88585612-88583695)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-896, gnl|bosTau2|chr11 (36011481-36010635)
               

               
               5-896, gnl|Hg17|chr2 (88585612-88583695)

	5-896, gnl\|bosTau2\|chr11 (36011481-36010635)
	5-896, gnl\|Hg17\|chr2 (88585612-88583695)