Non-Coding RNA Search

Pig4-TMW8065C05

Sequence:


               
               GAACTCCACTAAAAACTCTGAAACTTCAGTATGAGTGTAAATATTTTAGTCTTATAAGCA
AGGATTTGAGTAATTACAGTGAATTTTATTTATGCTGTATATGTTTCTCTTATACTTCAG
ACACTATGAACTGAAAAGAAAAATGTTTTCGTACTGTTTAATTTATTTTTATTGTTTGAA
CAGGAAGTGAACAGTTGTTTCCAACAAAGTTTTACTTTTTGTAGAATTTTAAAAGTAATG
ATTTTTATCAGGAGTCTATTAAGGTCAATATTAATAACACTGAAACAGGAAATCTAACTC
CCAATATTGGAATTTTGGTACTTTTTTTTTCACATACTTGTTCTTTATTTAGCAACTCTG
ATTCGTTTAAATATATCTTCTATAGAATTCTATGTGCCTTTTTACCTTGTGGCCTTTTTA
TTATTCTTACTAAGGTACAGAAGTGTCAGCAGAAGCACTGATGACTCTTTTCTACTATCC
AACAGGGTTAATTTCACCACAGAATTGCTTTAAATCTGAATAACTTAAGTTTCACTTATA
TTACTGTAGTTAATGTTTATGATGCAAATGGTTGAACAATTATTGTTAATACTTTTCATT
ACAATGAAAGTAACAGTTTTAGACTACCATGTAAAACCAATTCTAGAGGCTATGAAGACA
ACCATTTTAAAGCAAAGAAAGAAAAGTACATTCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCCACTAAAAACTCTGAAACTTCAGTATGAGTGTAAATATTTTAGTCTTATAAGCA
AGGATTTGAGTAATTACAGTGAATTTTATTTATGCTGTATATGTTTCTCTTATACTTCAG
ACACTATGAACTGAAAAGAAAAATGTTTTCGTACTGTTTAATTTATTTTTATTGTTTGAA
CAGGAAGTGAACAGTTGTTTCCAACAAAGTTTTACTTTTTGTAGAATTTTAAAAGTAATG
ATTTTTATCAGGAGTCTATTAAGGTCAATATTAATAACACTGAAACAGGAAATCTAACTC
CCAATATTGGAATTTTGGTACTTTTTTTTTCACATACTTGTTCTTTATTTAGCAACTCTG
ATTCGTTTAAATATATCTTCTATAGAATTCTATGTGCCTTTTTACCTTGTGGCCTTTTTA
TTATTCTTACTAAGGTACAGAAGTGTCAGCAGAAGCACTGATGACTCTTTTCTACTATCC
AACAGGGTTAATTTCACCACAGAATTGCTTTAAATCTGAATAACTTAAGTTTCACTTATA
TTACTGTAGTTAATGTTTATGATGCAAATGGTTGAACAATTATTGTTAATACTTTTCATT
ACAATGAAAGTAACAGTTTTAGACTACCATGTAAAACCAATTCTAGAGGCTATGAAGACA
ACCATTTTAAAGCAAAGAAAGAAAAGTACATTCCAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               194-293, - strand, RNAz p=0.911313
               

               
               372-491, + strand, RNAz p=0.639663

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-293, - strand, RNAz p=0.911313
               

               
               372-491, + strand, RNAz p=0.639663

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017420, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017420, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-682, gnl|bosTau2|chr10 (49542486-49543145)
               

               
               2-682, gnl|Hg17|chr14 (60249279-60248618)
               

               
               2-682, gnl|Mm7|chr12 (71053340-71052600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-682, gnl|bosTau2|chr10 (49542486-49543145)
               

               
               2-682, gnl|Hg17|chr14 (60249279-60248618)
               

               
               2-682, gnl|Mm7|chr12 (71053340-71052600)

	194-293, - strand, RNAz p=0.911313
	372-491, + strand, RNAz p=0.639663

	2-682, gnl\|bosTau2\|chr10 (49542486-49543145)
	2-682, gnl\|Hg17\|chr14 (60249279-60248618)
	2-682, gnl\|Mm7\|chr12 (71053340-71052600)